Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACK2OW_RS21240 Genome accession   NZ_CP180575
Coordinates   4062739..4063029 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0ABU0VDB5
Organism   Bacillus subtilis strain K3C     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4057739..4068029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS21225 (ACK2OW_21225) yabE 4057934..4059247 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  ACK2OW_RS21230 (ACK2OW_21230) dayD 4059403..4060170 (-) 768 WP_014475570.1 TatD family hydrolase -
  ACK2OW_RS21235 (ACK2OW_21235) metG 4060250..4062244 (-) 1995 WP_416042437.1 methionine--tRNA ligase -
  ACK2OW_RS21240 (ACK2OW_21240) abrB 4062739..4063029 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ACK2OW_RS21245 (ACK2OW_21245) rsmI 4063078..4063956 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACK2OW_RS21250 (ACK2OW_21250) yazA 4063931..4064230 (-) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  ACK2OW_RS21255 (ACK2OW_21255) trmNF 4064217..4064960 (-) 744 WP_021479732.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACK2OW_RS21260 (ACK2OW_21260) yabA 4065019..4065378 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ACK2OW_RS21265 (ACK2OW_21265) yaaT 4065393..4066220 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  ACK2OW_RS21270 (ACK2OW_21270) holB 4066223..4067212 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  ACK2OW_RS21275 (ACK2OW_21275) yaaR 4067224..4067664 (-) 441 WP_219912796.1 YaaR family protein -
  ACK2OW_RS21280 (ACK2OW_21280) darA 4067677..4068006 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=975088 ACK2OW_RS21240 WP_003226760.1 4062739..4063029(+) (abrB) [Bacillus subtilis strain K3C]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=975088 ACK2OW_RS21240 WP_003226760.1 4062739..4063029(+) (abrB) [Bacillus subtilis strain K3C]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1