Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACK2OW_RS21155 Genome accession   NZ_CP180575
Coordinates   4047516..4047746 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain K3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4042516..4052746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS21145 (ACK2OW_21145) spoVT 4043241..4043777 (-) 537 WP_003218365.1 stage V sporulation protein T -
  ACK2OW_RS21150 (ACK2OW_21150) mfd 4043913..4047446 (-) 3534 WP_416042436.1 transcription-repair coupling factor -
  ACK2OW_RS21155 (ACK2OW_21155) subA/fin 4047516..4047746 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACK2OW_RS21160 (ACK2OW_21160) pth 4047806..4048372 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ACK2OW_RS21165 (ACK2OW_21165) rplYB 4048479..4049093 (-) 615 WP_411226406.1 50S ribosomal protein L25/general stress protein Ctc -
  ACK2OW_RS21170 (ACK2OW_21170) prsS 4049178..4050131 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ACK2OW_RS21175 (ACK2OW_21175) glmU 4050154..4051524 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACK2OW_RS21180 (ACK2OW_21180) spoVG 4051717..4052010 (-) 294 WP_003218346.1 septation regulator SpoVG -
  ACK2OW_RS21185 (ACK2OW_21185) ridA 4052205..4052582 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=975087 ACK2OW_RS21155 WP_003243417.1 4047516..4047746(-) (subA/fin) [Bacillus subtilis strain K3C]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=975087 ACK2OW_RS21155 WP_003243417.1 4047516..4047746(-) (subA/fin) [Bacillus subtilis strain K3C]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1