Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACK2OW_RS18350 Genome accession   NZ_CP180575
Coordinates   3525747..3526181 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain K3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3520747..3531181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS18320 (ACK2OW_18320) ydaD 3521395..3522255 (+) 861 WP_416042391.1 SDR family oxidoreductase -
  ACK2OW_RS18325 (ACK2OW_18325) lyxE 3522271..3522774 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  ACK2OW_RS18330 (ACK2OW_18330) ydaF 3522860..3523411 (+) 552 WP_003234398.1 GNAT family N-acetyltransferase -
  ACK2OW_RS18335 (ACK2OW_18335) ydaG 3523489..3523911 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACK2OW_RS18340 (ACK2OW_18340) amj 3524417..3525226 (+) 810 WP_015715258.1 lipid II flippase Amj -
  ACK2OW_RS18345 (ACK2OW_18345) ydzA 3525271..3525561 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ACK2OW_RS18350 (ACK2OW_18350) lrpC 3525747..3526181 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACK2OW_RS18355 (ACK2OW_18355) topB 3526246..3528429 (+) 2184 WP_283857640.1 DNA topoisomerase III -
  ACK2OW_RS18360 (ACK2OW_18360) ephJ 3528631..3529719 (+) 1089 WP_416042392.1 lipoprotein YdaJ -
  ACK2OW_RS18365 (ACK2OW_18365) epsK 3529700..3530551 (+) 852 WP_416042393.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=975071 ACK2OW_RS18350 WP_003246585.1 3525747..3526181(+) (lrpC) [Bacillus subtilis strain K3C]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=975071 ACK2OW_RS18350 WP_003246585.1 3525747..3526181(+) (lrpC) [Bacillus subtilis strain K3C]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
TAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment