Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACK2OW_RS13865 Genome accession   NZ_CP180575
Coordinates   2578008..2579144 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2573008..2584144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS13845 (ACK2OW_13845) uxaA 2573458..2574951 (+) 1494 WP_153256698.1 UxaA family hydrolase -
  ACK2OW_RS13850 (ACK2OW_13850) yjnA 2574990..2575754 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ACK2OW_RS13855 (ACK2OW_13855) bstD 2575979..2576443 (-) 465 WP_014479541.1 DinB family protein -
  ACK2OW_RS13860 (ACK2OW_13860) yjoB 2576592..2577863 (+) 1272 WP_003245490.1 ATPase YjoB -
  ACK2OW_RS13865 (ACK2OW_13865) rapC 2578008..2579144 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ACK2OW_RS13870 (ACK2OW_13870) phrA 2579134..2579268 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACK2OW_RS13875 (ACK2OW_13875) yjpA 2579299..2579556 (-) 258 WP_003232731.1 YciI family protein -
  ACK2OW_RS13880 (ACK2OW_13880) xlyB 2579677..2580630 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  ACK2OW_RS13885 (ACK2OW_13885) yjqA 2580670..2581047 (-) 378 WP_015715726.1 PH domain-containing protein -
  ACK2OW_RS13890 (ACK2OW_13890) pghB 2581153..2581755 (+) 603 WP_077670646.1 poly-gamma-glutamate hydrolase family protein -
  ACK2OW_RS13895 (ACK2OW_13895) xpdC 2581832..2582668 (+) 837 WP_003245071.1 manganese catalase family protein -
  ACK2OW_RS13900 (ACK2OW_13900) xkdA 2582712..2583308 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ACK2OW_RS13905 (ACK2OW_13905) xre 2583471..2583812 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=975035 ACK2OW_RS13865 WP_015252291.1 2578008..2579144(+) (rapC) [Bacillus subtilis strain K3C]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=975035 ACK2OW_RS13865 WP_015252291.1 2578008..2579144(+) (rapC) [Bacillus subtilis strain K3C]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418