Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   ACK2OW_RS12855 Genome accession   NZ_CP180575
Coordinates   2398455..2401847 (+) Length   1130 a.a.
NCBI ID   WP_411225603.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2393455..2406847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS12845 (ACK2OW_12845) addA 2393513..2397211 (+) 3699 WP_411225602.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACK2OW_RS12850 (ACK2OW_12850) sbcD 2397283..2398458 (+) 1176 WP_046160253.1 exonuclease subunit SbcD -
  ACK2OW_RS12855 (ACK2OW_12855) sbcC 2398455..2401847 (+) 3393 WP_411225603.1 exonuclease subunit SbcC Machinery gene
  ACK2OW_RS12860 (ACK2OW_12860) hlpB 2401861..2402163 (+) 303 WP_064671212.1 HNH nuclease-like protein HlpB -
  ACK2OW_RS12865 (ACK2OW_12865) gerPF 2402200..2402418 (-) 219 WP_003233096.1 spore germination protein -
  ACK2OW_RS12870 (ACK2OW_12870) gerPE 2402450..2402851 (-) 402 WP_077670600.1 spore germination protein GerPE -
  ACK2OW_RS12875 (ACK2OW_12875) gerPD 2402851..2403027 (-) 177 WP_014479392.1 spore germination protein GerPD -
  ACK2OW_RS12880 (ACK2OW_12880) gerPC 2403024..2403641 (-) 618 WP_014476381.1 spore germination protein GerPC -
  ACK2OW_RS12885 (ACK2OW_12885) gerPB 2403665..2403898 (-) 234 WP_015483061.1 spore germination protein GerPB -
  ACK2OW_RS12890 (ACK2OW_12890) gerPA 2403913..2404134 (-) 222 WP_003233088.1 spore germination protein -
  ACK2OW_RS12895 (ACK2OW_12895) yisI 2404556..2404726 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  ACK2OW_RS12900 (ACK2OW_12900) yisJ 2404872..2405795 (-) 924 WP_416042292.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128849.30 Da        Isoelectric Point: 5.1848

>NTDB_id=975024 ACK2OW_RS12855 WP_411225603.1 2398455..2401847(+) (sbcC) [Bacillus subtilis strain K3C]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQPHIDSMQKRLLEAEIAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLTEQEQLSRLQEIEIKLSEAKQEEERKKTELQQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSNERKSCHQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEETRKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKQTDVLLTEAAALSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFENQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQIIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAVERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=975024 ACK2OW_RS12855 WP_411225603.1 2398455..2401847(+) (sbcC) [Bacillus subtilis strain K3C]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATTCTCGACGCAATGACTCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTTGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAATAGCAGCAGCTCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAACAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
AGAGCAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGA
CTGAACTCCAGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTGGAGACGGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCAATGAGCGAAAAAGCTGCCATCAGGC
CGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCAGTTCAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGACTAGAAAGAG
CCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GTAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATTAAGCAGACAGATGTATTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCGCAGAACCTTGAAGCGG
CAGCTTCCTTCGAAAATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATAATCGGCGCCTATCAGGAATCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCTGGACACCGGCTTGAACGGGAAAAGCTGGAGCTTCATTATGCGGTTGAACGAATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
GGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCCGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTAAGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTTCAGTTCTTTTTCTTAGACGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCTTTAGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTACAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-253)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.407

100

0.984