Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R8474_RS08665 Genome accession   NZ_AP026914
Coordinates   1726735..1727445 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721735..1732445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS08650 (PC0003_17220) - 1722390..1722638 (-) 249 WP_000364990.1 YneF family protein -
  R8474_RS08655 (PC0003_17230) treC 1722780..1724405 (-) 1626 WP_000171213.1 alpha,alpha-phosphotrehalase -
  R8474_RS08660 (PC0003_17240) treP 1724583..1726550 (-) 1968 WP_000514355.1 PTS system trehalose-specific EIIBC component -
  R8474_RS08665 (PC0003_17250) treR 1726735..1727445 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8474_RS08670 (PC0003_17260) - 1727478..1728281 (-) 804 WP_000157664.1 ABC transporter ATP-binding protein -
  R8474_RS08675 (PC0003_17270) - 1728294..1729187 (-) 894 WP_001012091.1 ABC transporter permease -
  R8474_RS08680 - 1729199..1730008 (-) 810 Protein_1722 ABC transporter substrate-binding protein -
  R8474_RS08685 (PC0003_17300) amiF 1730627..1731553 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=97501 R8474_RS08665 WP_000760673.1 1726735..1727445(+) (treR) [Streptococcus pneumoniae strain PZ900700003]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=97501 R8474_RS08665 WP_000760673.1 1726735..1727445(+) (treR) [Streptococcus pneumoniae strain PZ900700003]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment