Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACK2OW_RS02480 Genome accession   NZ_CP180575
Coordinates   416848..418338 (-) Length   496 a.a.
NCBI ID   WP_151870191.1    Uniprot ID   -
Organism   Bacillus subtilis strain K3C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 411848..423338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS02450 (ACK2OW_02450) gudB 411992..413266 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ACK2OW_RS02455 (ACK2OW_02455) mecB 413422..414006 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ACK2OW_RS02460 (ACK2OW_02460) ypbG 414165..414944 (-) 780 WP_003230532.1 metallophosphoesterase -
  ACK2OW_RS02465 (ACK2OW_02465) ypbF 415031..415474 (-) 444 WP_003230531.1 YpbF family protein -
  ACK2OW_RS02470 (ACK2OW_02470) claE 415537..416268 (-) 732 WP_411225436.1 LysM peptidoglycan-binding domain-containing protein -
  ACK2OW_RS02475 (ACK2OW_02475) ypbD 416219..416821 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  ACK2OW_RS02480 (ACK2OW_02480) recS 416848..418338 (-) 1491 WP_151870191.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACK2OW_RS02485 (ACK2OW_02485) gmmB 418331..419389 (-) 1059 WP_187001794.1 helix-turn-helix domain-containing protein -
  ACK2OW_RS02490 (ACK2OW_02490) fdxA 419655..419903 (+) 249 WP_003225461.1 ferredoxin -
  ACK2OW_RS02495 (ACK2OW_02495) fmnP 419943..420515 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ACK2OW_RS02500 (ACK2OW_02500) serA 421012..422589 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56543.06 Da        Isoelectric Point: 6.4518

>NTDB_id=974945 ACK2OW_RS02480 WP_151870191.1 416848..418338(-) (recS) [Bacillus subtilis strain K3C]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSFYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=974945 ACK2OW_RS02480 WP_151870191.1 416848..418338(-) (recS) [Bacillus subtilis strain K3C]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTTCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTTTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996