Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACMX8W_RS21450 Genome accession   NZ_CP180439
Coordinates   4109734..4110423 (-) Length   229 a.a.
NCBI ID   WP_047183454.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4104734..4115423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS21430 (ACMX8W_21430) yxeA 4105639..4105986 (-) 348 WP_015715011.1 YxeA family protein -
  ACMX8W_RS21435 (ACMX8W_21435) yxdM 4106000..4107868 (-) 1869 WP_047183453.1 ABC transporter permease YxdM -
  ACMX8W_RS21440 (ACMX8W_21440) yxdL 4107843..4108616 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  ACMX8W_RS21445 (ACMX8W_21445) yxdK 4108760..4109737 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  ACMX8W_RS21450 (ACMX8W_21450) braR 4109734..4110423 (-) 690 WP_047183454.1 two-component system response regulator YxdJ Regulator
  ACMX8W_RS21455 (ACMX8W_21455) iolJ 4110531..4111403 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  ACMX8W_RS21460 (ACMX8W_21460) iolI 4111424..4112260 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  ACMX8W_RS21465 (ACMX8W_21465) iolH 4112346..4113215 (-) 870 WP_014478480.1 sugar phosphate isomerase/epimerase family protein -
  ACMX8W_RS21470 (ACMX8W_21470) iolG 4113235..4114269 (-) 1035 WP_047183455.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26589.27 Da        Isoelectric Point: 4.7647

>NTDB_id=974933 ACMX8W_RS21450 WP_047183454.1 4109734..4110423(-) (braR) [Bacillus subtilis strain Z-294]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTTVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
SLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=974933 ACMX8W_RS21450 WP_047183454.1 4109734..4110423(-) (braR) [Bacillus subtilis strain Z-294]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAACTGTTCTTGATGTCTTTTTGCGGGAGAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCAATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
TCGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATCGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment