Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   UXQ49_RS07625 Genome accession   NZ_CP151113
Coordinates   1573425..1574399 (-) Length   324 a.a.
NCBI ID   WP_000697223.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN165     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568425..1579399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ49_RS07585 (UXQ49_07585) gcvT 1568926..1570017 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  UXQ49_RS07590 (UXQ49_07590) - 1570176..1570700 (-) 525 WP_001015120.1 shikimate kinase -
  UXQ49_RS07595 (UXQ49_07595) - 1570690..1570836 (-) 147 WP_001789879.1 hypothetical protein -
  UXQ49_RS07600 (UXQ49_07600) comGF 1570933..1571430 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  UXQ49_RS07605 (UXQ49_07605) comGE 1571348..1571647 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  UXQ49_RS07610 (UXQ49_07610) comGD 1571634..1572080 (-) 447 WP_216770765.1 competence type IV pilus minor pilin ComGD Machinery gene
  UXQ49_RS07615 (UXQ49_07615) comGC 1572058..1572369 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  UXQ49_RS07620 (UXQ49_07620) comGB 1572383..1573453 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  UXQ49_RS07625 (UXQ49_07625) comGA 1573425..1574399 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  UXQ49_RS07630 (UXQ49_07630) - 1574451..1575074 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  UXQ49_RS07635 (UXQ49_07635) - 1575071..1575400 (-) 330 Protein_1503 MTH1187 family thiamine-binding protein -
  UXQ49_RS07640 (UXQ49_07640) - 1575400..1576386 (-) 987 WP_000161307.1 ROK family glucokinase -
  UXQ49_RS07645 (UXQ49_07645) - 1576383..1576586 (-) 204 WP_000087561.1 YqgQ family protein -
  UXQ49_RS07650 (UXQ49_07650) - 1576567..1578030 (-) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -
  UXQ49_RS07655 (UXQ49_07655) - 1578042..1578581 (-) 540 WP_341524424.1 5-formyltetrahydrofolate cyclo-ligase -
  UXQ49_RS07660 (UXQ49_07660) rpmG 1578790..1578939 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36926.01 Da        Isoelectric Point: 8.8516

>NTDB_id=974929 UXQ49_RS07625 WP_000697223.1 1573425..1574399(-) (comGA) [Staphylococcus aureus strain BSN165]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQVTNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=974929 UXQ49_RS07625 WP_000697223.1 1573425..1574399(-) (comGA) [Staphylococcus aureus strain BSN165]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGACTTGATGTATCTACACAACAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTGATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGTAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997

Multiple sequence alignment