Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACMX8W_RS16280 Genome accession   NZ_CP180439
Coordinates   3089376..3090086 (-) Length   236 a.a.
NCBI ID   WP_047183044.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084376..3095086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS16260 (ACMX8W_16260) cysK 3084427..3085362 (+) 936 WP_015384397.1 cysteine synthase A -
  ACMX8W_RS16265 (ACMX8W_16265) pepV 3085396..3086787 (-) 1392 WP_015483572.1 dipeptidase PepV -
  ACMX8W_RS16270 (ACMX8W_16270) pbuO 3086884..3088182 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  ACMX8W_RS16275 (ACMX8W_16275) ythQ 3088222..3089379 (-) 1158 WP_015384399.1 ABC transporter permease -
  ACMX8W_RS16280 (ACMX8W_16280) pptA 3089376..3090086 (-) 711 WP_047183044.1 ABC transporter ATP-binding protein Regulator
  ACMX8W_RS16285 (ACMX8W_16285) ytzE 3090376..3090597 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACMX8W_RS16290 (ACMX8W_16290) rsuA 3090719..3091438 (-) 720 WP_047183045.1 pseudouridine synthase -
  ACMX8W_RS16295 (ACMX8W_16295) murJ 3091507..3093141 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  ACMX8W_RS16300 (ACMX8W_16300) ytfP 3093344..3094606 (+) 1263 WP_080344281.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26546.63 Da        Isoelectric Point: 5.5930

>NTDB_id=974907 ACMX8W_RS16280 WP_047183044.1 3089376..3090086(-) (pptA) [Bacillus subtilis strain Z-294]
MTSLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=974907 ACMX8W_RS16280 WP_047183044.1 3089376..3090086(-) (pptA) [Bacillus subtilis strain Z-294]
TTGACAAGTTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTTTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATCGAAGAGAGGGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432