Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AABL52_RS27065 Genome accession   NZ_CP151108
Coordinates   5283744..5284871 (-) Length   375 a.a.
NCBI ID   WP_000470743.1    Uniprot ID   A0A164MC53
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5278744..5289871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS27055 (AABL52_27055) gyrA 5279223..5281694 (-) 2472 WP_001282859.1 DNA gyrase subunit A -
  AABL52_RS27060 (AABL52_27060) gyrB 5281783..5283705 (-) 1923 WP_000435976.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AABL52_RS27065 (AABL52_27065) recF 5283744..5284871 (-) 1128 WP_000470743.1 DNA replication/repair protein RecF Machinery gene
  AABL52_RS27070 (AABL52_27070) yaaA 5284884..5285096 (-) 213 WP_000821366.1 S4 domain-containing protein YaaA -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43363.72 Da        Isoelectric Point: 6.7809

>NTDB_id=974906 AABL52_RS27065 WP_000470743.1 5283744..5284871(-) (recF) [Bacillus paramobilis strain IMGN7]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=974906 AABL52_RS27065 WP_000470743.1 5283744..5284871(-) (recF) [Bacillus paramobilis strain IMGN7]
TTGTTTATTTCAGAAATACAGTTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTACGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGACTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCCCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAAGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MC53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment