Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AABL52_RS26865 Genome accession   NZ_CP151108
Coordinates   5247172..5247456 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paramobilis strain IMGN7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5242172..5252456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS26850 (AABL52_26850) rnmV 5242985..5243542 (-) 558 WP_000692828.1 ribonuclease M5 -
  AABL52_RS26855 (AABL52_26855) - 5243737..5244504 (-) 768 WP_000895839.1 TatD family hydrolase -
  AABL52_RS26860 (AABL52_26860) metG 5244671..5246653 (-) 1983 WP_000134145.1 methionine--tRNA ligase -
  AABL52_RS26865 (AABL52_26865) abrB 5247172..5247456 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AABL52_RS26870 (AABL52_26870) rsmI 5247477..5248352 (-) 876 WP_097844302.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AABL52_RS26875 (AABL52_26875) - 5248321..5248611 (-) 291 WP_000414345.1 GIY-YIG nuclease family protein -
  AABL52_RS26880 (AABL52_26880) - 5248598..5249338 (-) 741 WP_001055372.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AABL52_RS26885 (AABL52_26885) yabA 5249458..5249811 (-) 354 WP_000412061.1 DNA replication initiation control protein YabA -
  AABL52_RS26890 (AABL52_26890) - 5249826..5250653 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  AABL52_RS26895 (AABL52_26895) holB 5250659..5251642 (-) 984 WP_000169569.1 DNA polymerase III subunit delta' -
  AABL52_RS26900 (AABL52_26900) tmk 5251678..5252304 (-) 627 WP_061678924.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=974904 AABL52_RS26865 WP_000843036.1 5247172..5247456(+) (abrB) [Bacillus paramobilis strain IMGN7]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=974904 AABL52_RS26865 WP_000843036.1 5247172..5247456(+) (abrB) [Bacillus paramobilis strain IMGN7]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment