Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABL52_RS26555 Genome accession   NZ_CP151108
Coordinates   5188951..5190327 (-) Length   458 a.a.
NCBI ID   WP_001085204.1    Uniprot ID   A0A0J7D6B4
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5183951..5195327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS26535 (AABL52_26535) ispF 5185315..5185791 (-) 477 WP_000488390.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AABL52_RS26540 (AABL52_26540) ispD 5185907..5186587 (-) 681 WP_000288280.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AABL52_RS26545 (AABL52_26545) - 5186604..5187713 (-) 1110 WP_000919678.1 PIN/TRAM domain-containing protein -
  AABL52_RS26550 (AABL52_26550) disA 5187874..5188947 (-) 1074 WP_000392166.1 DNA integrity scanning diadenylate cyclase DisA -
  AABL52_RS26555 (AABL52_26555) radA 5188951..5190327 (-) 1377 WP_001085204.1 DNA repair protein RadA Machinery gene
  AABL52_RS26560 (AABL52_26560) clpC 5190424..5192859 (-) 2436 WP_061678382.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  AABL52_RS26565 (AABL52_26565) - 5192882..5193946 (-) 1065 WP_000050824.1 protein arginine kinase -
  AABL52_RS26570 (AABL52_26570) - 5193951..5194499 (-) 549 WP_000128407.1 UvrB/UvrC motif-containing protein -
  AABL52_RS26575 (AABL52_26575) ctsR 5194672..5195133 (-) 462 WP_001244555.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49884.59 Da        Isoelectric Point: 7.4250

>NTDB_id=974902 AABL52_RS26555 WP_001085204.1 5188951..5190327(-) (radA) [Bacillus paramobilis strain IMGN7]
MAKKKTKFTCQECGYQSPKYMGKCPGCGQWNTLVEEMEPVVSSRRLNYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIA
AHIEEMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTTPTDAVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFQRAIIPRKNLGGWTIPDGIEVVGVSNLGEALRLTLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=974902 AABL52_RS26555 WP_001085204.1 5188951..5190327(-) (radA) [Bacillus paramobilis strain IMGN7]
ATGGCTAAAAAGAAAACAAAATTCACATGTCAAGAGTGTGGTTATCAGTCACCAAAATATATGGGGAAATGCCCTGGTTG
TGGTCAATGGAATACACTTGTTGAAGAGATGGAACCGGTTGTATCATCAAGACGCCTTAATTATGCCAATGCAATTCAAT
CAGAAGTAACAAAACCAAGACGCCTAACAGAAGTAGAAACAAAATCTGAGGCACGTATTGAAACGAAATTCCAAGAGTTT
AACCGTGTACTTGGTGGTGGGATTGTAGATGGATCTTTAGTACTTATTGGTGGAGACCCTGGTATTGGAAAATCAACATT
GCTATTACAGATTTCATCACAATTAGCAGATTCTTCATATGATGTACTATATATATCAGGTGAAGAATCGGCAAAACAGA
TTAAACTTCGTGCAGATCGTTTGCATGTAAAGGGTAGTAATCTATTTGTTGTAGCAGAGACAGATTTGCAGCGAATTGCT
GCACACATTGAAGAGATGAATCCAGCTTTTGTTGTTATTGATTCCATTCAAACGATACATTTACCTGAGGTAACGTCAGC
GCCGGGAAGTGTGGCACAAGTACGTGAATGTACAGCGGAATTAATGAAACTTGCAAAAACGAAAGGAATTCCTATTTTTA
TCGTCGGACATGTAACAAAAGAGGGGGCAATTGCAGGACCTCGTATGTTAGAACATATGGTCGATGCAGTTCTTTACTTT
GAAGGAGATCGTCATCATACATATCGTATCTTGCGAGCTGTGAAGAATCGTTTTGGTTCCACGAATGAAATGGGTATTTT
TGAAATGAAAGAGCTTGGTCTTGCGGAAGTCTTAAACCCTTCTGAAATTTTTCTTGAGGAAAGACCCGTTGGAGTCGCAG
GATCAACAGTAGTTGCCTCAATGGAAGGAACAAGACCGGTTTTAGTAGAAATACAAGCATTAATCTCCCCTACTAGTTTT
GGAAACCCTCGAAGAATGGCGACGGGAATTGATCATAACCGTGTATCGCTTATTATGGCAGTGCTAGAAAAAAGAACAGG
TTTATTATTGCAAAACCAAGACGCATATTTAAAAGTAGCGGGTGGTTTGAAATTAGATGAACCAGCAATTGATTTAGCTG
TGGCTTTAAGTATTGCTTCAAGTTTTAGAGATAAACCTACGACACCAACTGATGCAGTAATAGGAGAAGTAGGATTAACT
GGAGAAATAAGAAGAGTATCAAGAATTGAACAACGTGTACAAGAAGCAGCTAAATTAGGATTTCAACGTGCTATTATTCC
TAGAAAAAATTTGGGGGGATGGACAATCCCGGATGGGATTGAGGTAGTAGGTGTATCTAATTTAGGGGAAGCGCTTCGTT
TGACATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7D6B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus pneumoniae Rx1

64.238

98.908

0.635
  radA Streptococcus pneumoniae D39

64.238

98.908

0.635
  radA Streptococcus pneumoniae R6

64.238

98.908

0.635
  radA Streptococcus pneumoniae TIGR4

64.238

98.908

0.635
  radA Streptococcus mitis SK321

64.238

98.908

0.635
  radA Streptococcus mitis NCTC 12261

64.018

98.908

0.633

Multiple sequence alignment