Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   AABL52_RS21155 Genome accession   NZ_CP151108
Coordinates   4129130..4132645 (-) Length   1171 a.a.
NCBI ID   WP_341518334.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4124130..4137645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS21130 (AABL52_21130) gerPD 4124205..4124399 (+) 195 WP_001052807.1 spore germination protein GerPD -
  AABL52_RS21135 (AABL52_21135) - 4124415..4124801 (+) 387 WP_088095504.1 spore germination protein GerPE -
  AABL52_RS21140 (AABL52_21140) gerPF 4124844..4125059 (+) 216 WP_001141566.1 spore germination protein GerPF -
  AABL52_RS21145 (AABL52_21145) - 4125108..4125395 (-) 288 WP_341518332.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  AABL52_RS21150 (AABL52_21150) addA 4125408..4129133 (-) 3726 WP_341518333.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  AABL52_RS21155 (AABL52_21155) addB 4129130..4132645 (-) 3516 WP_341518334.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  AABL52_RS21160 (AABL52_21160) lepB 4132762..4133325 (-) 564 WP_048545235.1 signal peptidase I -
  AABL52_RS21165 (AABL52_21165) - 4133382..4133975 (-) 594 WP_000347517.1 TVP38/TMEM64 family protein -
  AABL52_RS21170 (AABL52_21170) - 4134364..4134945 (-) 582 WP_097845323.1 competence protein ComK -
  AABL52_RS21175 (AABL52_21175) - 4135229..4135414 (+) 186 WP_000391436.1 hypothetical protein -
  AABL52_RS21180 (AABL52_21180) cspA 4135646..4135849 (-) 204 WP_000301521.1 RNA chaperone/antiterminator CspA -
  AABL52_RS21185 (AABL52_21185) - 4136220..4137011 (+) 792 WP_341518335.1 phosphotransferase -

Sequence

Protein


Download         Length: 1171 a.a.        Molecular weight: 134250.31 Da        Isoelectric Point: 5.1762

>NTDB_id=974897 AABL52_RS21155 WP_341518334.1 4129130..4132645(-) (addB) [Bacillus paramobilis strain IMGN7]
MSLRFVIGRAGSGKSTLCLHEVQEELKQRPRGETILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLA
NKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDE
KTLAQPVNELDLFYETTLTYEKIKQVAREEKIEIEKTIPLMEQPRFHSQALAHLETHYEARPNEKFHGEASVTIHTAANL
RAEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRD
VVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRVRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEK
MSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIEL
APTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATP
EVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAKKLSSVVSRDLYGDTIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL
LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDESG
TFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHIHNPIVEMKGDASEAEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQEFNVLQKYVHHTFENIGKDITEGVIDIAP
YKKGNKAACTFCNFKSVCQFDESLEDNQFRTLKDMKDSEAMEKIREEVGGE

Nucleotide


Download         Length: 3516 bp        

>NTDB_id=974897 AABL52_RS21155 WP_341518334.1 4129130..4132645(-) (addB) [Bacillus paramobilis strain IMGN7]
ATGTCACTTCGATTTGTGATTGGTAGAGCGGGAAGTGGAAAAAGTACACTTTGTTTACACGAAGTGCAAGAAGAGTTAAA
GCAGCGCCCAAGAGGGGAAACAATATTATATCTTGTGCCAGAACAGATGACATTCCAAACACAGCAGGCGTTAATTGGTA
GTGAGGATGTTAGAGGTTCTATTCGGGCACAAGTTTTTAGTTTTTCACGGTTAGCGTGGAAGGTGCTGCAAGAAGTTGGC
GGAGCGAGTCGTCTTCACATTGATGAAGCAGGCGTACATATGCTACTTCGTAAAATTGTAGAGTCTCGTAAAGATGGATT
ATCAGTGTTCCAAAAAGCAGCGGAGCAAAACGGTTTCTTTGAACATCTTGGTAGTATGATTGCGGAGTTTAAACGTTACA
ACGTGACGCCATCTAACGTATATGAAATGTGGCAACAATTAGATGCGCATAGTAGCAGTGCCGAACAAAAGCTATTAGCG
AATAAAGTGTATGATCTACAACTATTATATGATGATTTCGAACGTGCTTTAATCGGAAAATATTTAGATTCAGAAGACTA
CCTGCAATTGCTAGTCGAAAAGCTTCCGCAATCTGAATATGTAAATGGGGCTGAAATTTATATAGATGGATTTCATTCGT
TCTCACCGCAAGAGCTAGAAATTGTAAGACAGCTTATGATTTGCGGAGCGAGAGTTACGATCACGTTAACGATAGATGAA
AAAACGTTAGCGCAGCCAGTAAATGAACTAGATTTATTTTATGAAACGACGTTAACGTATGAAAAAATAAAACAAGTAGC
ACGTGAAGAGAAGATAGAAATTGAAAAAACAATTCCGCTTATGGAACAACCACGTTTTCATTCGCAAGCATTAGCGCATT
TAGAAACTCATTATGAAGCACGACCAAATGAAAAGTTTCACGGGGAAGCAAGTGTAACGATTCATACAGCAGCGAATTTA
CGAGCTGAAGTAGAAGGTGTTGCTCGTGAAATTCGTAGACTTGTGGCGGACGAAGACTATCGTTACCGAGATATTGCGGT
TCTTCTTCGTAATGGGGAAAGTTATTACGATGTGATGCGAACGTTATTTACAGATTATAATATCCCGCACTTCATCGATG
AAAAACGCCCGATGTCACATCATCCGCTAGTAGAATGTATTCGTTCTGCACTAGAGATTATTAGTGGGAATTGGCGTTAT
GATGCAGTGTTTCGCTGCGTGAAAACAGAGCTTTTATATCCATTAGACGTAAGAAAAGAAACGATGCGCGAAGAGATGGA
TGAGTTTGAAAACTACTGTTTAGCGTACGGTGTACAAGGGAAGAGATGGACGTCTGAAGATCCATGGATGTATCGCCGCT
ATCGTTCTCTTGACGATACAGACGGGATGATTACAGACAGTGAACGTGAAATGGAAGAGAAAATAAATCGACTGCGCGAC
GTTGTAAGAACGCCTGTTATTCGTATGCAAAAAAGGCTGAAACGTGCGGGAACAGTTATGCAAATGTGCGAAGCTGTTTA
CTTATTTTTAGAAGAGCTTGATGTTCCGAAAAAACTAGAAGCATTACGTGTTCGTGCAGAAGAGAGCGGAGATTTCTTAT
TTGCGACAGATCATGAGCAAGTATGGGAAGAAGTAATGAGTCTTCTTGATACGTTCGTTGAAATGCTTGGCGAGGAGAAA
ATGTCACTTTCTATGTTCACAGACGTTATGTCGACAGGGCTTGAGGCGCTTCAATTCGCAAACATTCCGCCGTCATTAGA
CCAAGTGTTAATTGCGAATATTGATCGTTCTAGATTATCAAATGTGAAAGCAACATTTGTCATTGGCGTGAATGAAGGTG
TAATTCCAGCAGCACCTATGGATGAAGGTATGCTTTCTGATGAAGAAAGAGATGTTCTTAGTGCTGCAGGTATCGAATTA
GCACCAACGACGAGACAAACTTTATTAGAAGAACAGTTCGTTATGTACCAAATGGTAACGAGAGCGACAGAGAAATTATA
TATTTCTTGTCCGCTTGCAGATGAGGAAGGAAAGACGTTACTTGCGTCTAGCTTTATTAAGAAAATAAAAAGAATGTTCC
CTGATGTGAAAGATACATTTATTACGAATGACGTAAATGATTTATCACGTTCGGAACAAATTTCATACGTAGCAACGCCA
GAAGTAACGCTGTCATATGTAATGCAGCAACTTCAAACGTGGAAGCGATACGGATTTGAAGGGAATTTAGACTTTTGGTG
GGACGTATATAATTTCTACGTTACTTCAGATGAATGGAAGCAAAAAAGTAGCCGCGTATTATCAAGCTTATTCTACCGAA
ATCGTGCGAAAAAGCTAAGTTCAGTTGTAAGTAGAGATTTATACGGAGACACAATAAAAGGAAGCGTCTCTCGTATGGAA
CTATTTAACCGTTGCGCATATGCTCATTTCGCGCAGCACGGTTTATCATTAAGAGAGCGTGATATTTTCAAACTGGATGC
GCCAGATATCGGGGAATTATTCCATGCAGCGCTGAAGAGAATTGCAGACAGGCTATTACGTGAAAATCGTACTTGGGCGG
ATTTATCAATAAAAGAATGTGAGCATCTTTCTGTTTTAGTAATAGAAGAGATTGCACCGTTATTACAAAGACAAATTTTA
TTAAGTTCAAACCGTCATTTCTATTTAAAACAAAAACTACAACAAATCATTTTCCGTACGTCAATCATTCTTCGTGAGCA
CGCGAAATCAAGTGGTTTCGTACCAGTTGATTTAGAAGTGCCATTCGGTATGGGTGGTACAGGATCTCTTCCACCGATGG
AATTCTCATTACCAAATGGTGTGAAGATGGAAGTAGTTGGCCGTATTGACCGTGTTGATAAGGCAGAAGATGAAAGTGGT
ACGTTCCTACGTATTATTGACTATAAATCAAGCTCAAAAGCGTTAGACTTAACGGAAGTGTATTACGGATTAGCACTTCA
AATGTTAACGTATTTAGATGTTGTTACTTCAAATGCACATACGTGGATGAAAAAAGGCGGCACTGCATCACCGGCTGGTG
TACTGTACTTCCATATTCATAACCCAATCGTTGAGATGAAAGGTGACGCATCTGAAGCAGAAATCGAAAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGACTCGTGCTAGGCGATGCTGATGTTGTTCGTTTAATGGATAATAAACTTTCAACAGGAAG
CTCTGATATTATTTCTGCTGGCCTGAAAAAAGACGGTAGCTTTAGTGCGCGTTCGAGCATTGCAAGTGAACAAGAGTTTA
ACGTATTGCAAAAATACGTACACCATACGTTTGAAAATATCGGAAAAGACATTACAGAAGGCGTTATCGATATTGCTCCT
TACAAAAAGGGGAATAAAGCGGCATGTACGTTCTGTAACTTCAAATCTGTTTGTCAGTTCGATGAATCACTTGAAGATAA
TCAATTCCGTACGCTAAAAGATATGAAAGATAGCGAAGCGATGGAGAAAATTAGAGAGGAGGTTGGCGGAGAATGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(303-669)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(795-1139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.233

100

0.494

Multiple sequence alignment