Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AABL52_RS20460 Genome accession   NZ_CP151108
Coordinates   3999118..3999441 (+) Length   107 a.a.
NCBI ID   WP_000578881.1    Uniprot ID   A0A1C4ASA2
Organism   Bacillus paramobilis strain IMGN7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3994118..4004441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS20445 (AABL52_20445) - 3994635..3996002 (-) 1368 WP_341518283.1 aldehyde dehydrogenase -
  AABL52_RS20450 (AABL52_20450) inhA1 3996174..3998561 (-) 2388 WP_341518284.1 M6 family metalloprotease immune inhibitor InhA1 -
  AABL52_RS20455 (AABL52_20455) - 3998904..3999038 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  AABL52_RS20460 (AABL52_20460) sinR 3999118..3999441 (+) 324 WP_000578881.1 helix-turn-helix domain-containing protein Regulator
  AABL52_RS20465 (AABL52_20465) calY 3999518..4000111 (-) 594 WP_000053727.1 biofilm matrix protein CalY -
  AABL52_RS20470 (AABL52_20470) - 4000519..4001259 (-) 741 WP_341518285.1 DUF4047 domain-containing protein -
  AABL52_RS20475 (AABL52_20475) - 4001416..4002006 (-) 591 WP_340420985.1 TasA family protein -
  AABL52_RS20480 (AABL52_20480) - 4002069..4002638 (-) 570 WP_341518286.1 signal peptidase I -
  AABL52_RS20485 (AABL52_20485) - 4002831..4004117 (-) 1287 WP_341518287.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12368.20 Da        Isoelectric Point: 8.5805

>NTDB_id=974889 AABL52_RS20460 WP_000578881.1 3999118..3999441(+) (sinR) [Bacillus paramobilis strain IMGN7]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=974889 AABL52_RS20460 WP_000578881.1 3999118..3999441(+) (sinR) [Bacillus paramobilis strain IMGN7]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAGTTTACAAAGTGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4ASA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment