Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AABL52_RS19120 Genome accession   NZ_CP151108
Coordinates   3753433..3754035 (+) Length   200 a.a.
NCBI ID   WP_016088614.1    Uniprot ID   A0A2B5P7P5
Organism   Bacillus paramobilis strain IMGN7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3748433..3759035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS19075 (AABL52_19075) gpsB 3748740..3749075 (-) 336 WP_000622428.1 cell division regulator GpsB -
  AABL52_RS19080 (AABL52_19080) - 3749173..3749727 (-) 555 WP_016088607.1 DUF1273 domain-containing protein -
  AABL52_RS19085 (AABL52_19085) - 3749784..3750227 (-) 444 WP_016088608.1 CotD family spore coat protein -
  AABL52_RS19090 (AABL52_19090) - 3750384..3750887 (-) 504 WP_016134021.1 YppG family protein -
  AABL52_RS19095 (AABL52_19095) - 3751064..3751255 (+) 192 WP_088083495.1 YppF family protein -
  AABL52_RS19100 (AABL52_19100) - 3751282..3751626 (-) 345 WP_341518206.1 YppE family protein -
  AABL52_RS19105 (AABL52_19105) - 3751642..3751884 (-) 243 WP_001252039.1 hypothetical protein -
  AABL52_RS19110 (AABL52_19110) - 3751970..3752146 (+) 177 WP_340420899.1 phage portal protein -
  AABL52_RS19115 (AABL52_19115) - 3752304..3753329 (-) 1026 WP_341518207.1 DUF2515 domain-containing protein -
  AABL52_RS19120 (AABL52_19120) recU 3753433..3754035 (+) 603 WP_016088614.1 Holliday junction resolvase RecU Machinery gene
  AABL52_RS19125 (AABL52_19125) - 3754101..3756788 (+) 2688 WP_341518208.1 PBP1A family penicillin-binding protein -
  AABL52_RS19130 (AABL52_19130) - 3756812..3757330 (-) 519 WP_064056764.1 YpoC family protein -
  AABL52_RS19135 (AABL52_19135) nth 3757334..3757981 (-) 648 WP_000933021.1 endonuclease III -
  AABL52_RS19140 (AABL52_19140) dnaD 3757997..3758704 (-) 708 WP_000728533.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23333.60 Da        Isoelectric Point: 9.4276

>NTDB_id=974887 AABL52_RS19120 WP_016088614.1 3753433..3754035(+) (recU) [Bacillus paramobilis strain IMGN7]
MTIRYPNGKRYNQASQPQKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=974887 AABL52_RS19120 WP_016088614.1 3753433..3754035(+) (recU) [Bacillus paramobilis strain IMGN7]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCAAAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGACAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5P7P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment