Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AABL52_RS16300 Genome accession   NZ_CP151108
Coordinates   3184602..3184940 (-) Length   112 a.a.
NCBI ID   WP_000982032.1    Uniprot ID   A0A2A7XQ55
Organism   Bacillus paramobilis strain IMGN7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3179602..3189940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS16275 (AABL52_16275) argS 3179620..3181308 (-) 1689 WP_341517944.1 arginine--tRNA ligase -
  AABL52_RS16280 (AABL52_16280) - 3181609..3182385 (-) 777 WP_341517945.1 class I SAM-dependent methyltransferase -
  AABL52_RS16285 (AABL52_16285) - 3182435..3182869 (-) 435 WP_000063705.1 BrxA/BrxB family bacilliredoxin -
  AABL52_RS16290 (AABL52_16290) - 3182953..3183336 (-) 384 WP_000634892.1 DUF393 domain-containing protein -
  AABL52_RS16295 (AABL52_16295) - 3183340..3184467 (-) 1128 WP_341517946.1 conserved virulence factor C family protein -
  AABL52_RS16300 (AABL52_16300) ssbA 3184602..3184940 (-) 339 WP_000982032.1 single-stranded DNA-binding protein Machinery gene
  AABL52_RS16305 (AABL52_16305) - 3185099..3185353 (-) 255 WP_016134349.1 DUF4318 domain-containing protein -
  AABL52_RS16310 (AABL52_16310) - 3185498..3186229 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  AABL52_RS16315 (AABL52_16315) - 3186305..3188200 (-) 1896 WP_341517947.1 ABC-F family ATP-binding cassette domain-containing protein -
  AABL52_RS16320 (AABL52_16320) - 3188197..3188844 (-) 648 WP_336181382.1 HD domain-containing protein -
  AABL52_RS16325 (AABL52_16325) - 3188954..3189742 (+) 789 WP_341517948.1 hypothetical protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12851.66 Da        Isoelectric Point: 9.0926

>NTDB_id=974885 AABL52_RS16300 WP_000982032.1 3184602..3184940(-) (ssbA) [Bacillus paramobilis strain IMGN7]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRRAAENVTEYCTKGSLVGITGRIHTS
NYEDDQGKRIYKTEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=974885 AABL52_RS16300 WP_000982032.1 3184602..3184940(-) (ssbA) [Bacillus paramobilis strain IMGN7]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCTTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTCGTTT
GGCGAAGAGCGGCTGAGAATGTAACTGAATATTGTACGAAGGGGTCTCTTGTTGGAATTACCGGGCGTATTCATACGAGT
AATTACGAGGATGATCAAGGTAAGAGAATATATAAAACGGAAGTTGTAATTGAGAGCATTACATTTTTGGAGAGAAGGCG
GGAGGGGGCATCACAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7XQ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.5
  ssbA Streptococcus mutans UA159

43.636

98.214

0.429
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

93.75

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402

Multiple sequence alignment