Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AABL52_RS07445 Genome accession   NZ_CP151108
Coordinates   1404889..1405323 (+) Length   144 a.a.
NCBI ID   WP_000811502.1    Uniprot ID   A0A5C5ACH0
Organism   Bacillus paramobilis strain IMGN7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1399889..1410323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS07425 (AABL52_07425) - 1400790..1401953 (-) 1164 WP_016086487.1 aminotransferase A -
  AABL52_RS07430 (AABL52_07430) - 1402077..1402277 (-) 201 WP_000929285.1 hypothetical protein -
  AABL52_RS07435 (AABL52_07435) kinB 1402587..1403861 (+) 1275 WP_341519121.1 sporulation sensor histidine kinase KinB -
  AABL52_RS07440 (AABL52_07440) - 1403900..1404649 (-) 750 WP_000388475.1 DUF3967 domain-containing protein -
  AABL52_RS07445 (AABL52_07445) nucA/comI 1404889..1405323 (+) 435 WP_000811502.1 DNA-entry nuclease Machinery gene
  AABL52_RS07450 (AABL52_07450) comJ 1405359..1405748 (+) 390 WP_000424013.1 competence protein ComJ -
  AABL52_RS07455 (AABL52_07455) metE 1405786..1408074 (-) 2289 WP_341519122.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AABL52_RS07460 (AABL52_07460) - 1408745..1409176 (+) 432 WP_000438231.1 NUDIX hydrolase -
  AABL52_RS07465 (AABL52_07465) - 1409364..1409921 (-) 558 WP_341519123.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=974878 AABL52_RS07445 WP_000811502.1 1404889..1405323(+) (nucA/comI) [Bacillus paramobilis strain IMGN7]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=974878 AABL52_RS07445 WP_000811502.1 1404889..1405323(+) (nucA/comI) [Bacillus paramobilis strain IMGN7]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAAGAAACAAGTATCAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCAGCCGATAATCGCGGGGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACACGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5ACH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549

Multiple sequence alignment