Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AABL52_RS06220 Genome accession   NZ_CP151108
Coordinates   1196175..1197218 (+) Length   347 a.a.
NCBI ID   WP_341519697.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191175..1202218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS06185 (AABL52_06185) - 1191433..1191807 (+) 375 WP_341519063.1 nucleoside 2-deoxyribosyltransferase -
  AABL52_RS06190 (AABL52_06190) - 1191887..1192375 (+) 489 WP_341519064.1 hypothetical protein -
  AABL52_RS06195 (AABL52_06195) - 1192412..1192723 (-) 312 WP_341519065.1 hypothetical protein -
  AABL52_RS06200 (AABL52_06200) - 1192976..1193191 (+) 216 WP_001008329.1 DUF3912 family protein -
  AABL52_RS06205 (AABL52_06205) - 1193407..1194801 (-) 1395 WP_001094339.1 L-cystine transporter -
  AABL52_RS06210 (AABL52_06210) - 1194908..1195150 (-) 243 WP_000440714.1 DUF2626 domain-containing protein -
  AABL52_RS06215 (AABL52_06215) - 1195275..1195970 (-) 696 WP_097843949.1 helix-turn-helix domain-containing protein -
  AABL52_RS06220 (AABL52_06220) comGA 1196175..1197218 (+) 1044 WP_341519697.1 competence protein ComGA Machinery gene
  AABL52_RS06225 (AABL52_06225) comGB 1197211..1198242 (+) 1032 WP_000476187.1 competence type IV pilus assembly protein ComGB -
  AABL52_RS06230 (AABL52_06230) comGC 1198254..1198553 (+) 300 WP_341519066.1 competence type IV pilus major pilin ComGC -
  AABL52_RS06235 (AABL52_06235) comGD 1198550..1199005 (+) 456 WP_000810390.1 comG operon protein ComGD -
  AABL52_RS06240 (AABL52_06240) comGE 1198998..1199300 (+) 303 WP_000829515.1 competence type IV pilus minor pilin ComGE -
  AABL52_RS06245 (AABL52_06245) comGF 1199270..1199740 (+) 471 WP_098237867.1 competence type IV pilus minor pilin ComGF -
  AABL52_RS06250 (AABL52_06250) comGG 1199737..1200108 (+) 372 WP_097843946.1 competence type IV pilus minor pilin ComGG -
  AABL52_RS06255 (AABL52_06255) - 1200283..1200933 (+) 651 WP_000183843.1 2OG-Fe(II) oxygenase -
  AABL52_RS06260 (AABL52_06260) - 1201052..1201549 (+) 498 WP_000836636.1 shikimate kinase -
  AABL52_RS06265 (AABL52_06265) - 1201588..1201788 (+) 201 WP_000106080.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39370.99 Da        Isoelectric Point: 9.0695

>NTDB_id=974875 AABL52_RS06220 WP_341519697.1 1196175..1197218(+) (comGA) [Bacillus paramobilis strain IMGN7]
MNGIESFANMILKEACRVQASDLHVVPRKKDVVVQLRIGKDLMMKHCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=974875 AABL52_RS06220 WP_341519697.1 1196175..1197218(+) (comGA) [Bacillus paramobilis strain IMGN7]
ATGAATGGAATTGAAAGTTTTGCGAATATGATTTTGAAAGAGGCGTGTAGGGTACAAGCGTCGGACTTACATGTTGTGCC
CCGGAAGAAGGATGTAGTGGTTCAACTACGTATAGGAAAAGATTTAATGATGAAACATTGTATCGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGGCAAGAAGTATATTTACGCCTTTCCACGCTACCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTCTCTTTTTTAC
ACTATTCACATGGGTTACTCGTATTTACTGGACCAACTGGTTCTGGAAAGACAACAACAATGTATGCATTATTAGAGGTC
ATTAGAAAAAAGAAAACACGTCGTATCGTTACGCTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGATTGAAGGCTATTTTACGTCATGATCCGGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGGGCGATACTCAGGTTCATGGATTTTGGTATAACGAGGCAAGAAATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAGTGCCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTCAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTAGAATCTTCGATACGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.411

100

0.36

Multiple sequence alignment