Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABL52_RS05960 Genome accession   NZ_CP151108
Coordinates   1144028..1144774 (+) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1139028..1149774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS05930 (AABL52_05930) - 1139317..1141461 (+) 2145 WP_000942638.1 HD family phosphohydrolase -
  AABL52_RS05935 (AABL52_05935) ybeY 1141458..1141928 (+) 471 WP_000054696.1 rRNA maturation RNase YbeY -
  AABL52_RS05940 (AABL52_05940) - 1141925..1142278 (+) 354 WP_000715483.1 diacylglycerol kinase family protein -
  AABL52_RS05945 (AABL52_05945) - 1142378..1142776 (+) 399 WP_001086294.1 cytidine deaminase -
  AABL52_RS05950 (AABL52_05950) era 1142769..1143674 (+) 906 WP_001080235.1 GTPase Era -
  AABL52_RS05955 (AABL52_05955) - 1143851..1143994 (+) 144 WP_000883924.1 YqzL family protein -
  AABL52_RS05960 (AABL52_05960) recO 1144028..1144774 (+) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  AABL52_RS05965 (AABL52_05965) - 1144882..1145514 (+) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  AABL52_RS05970 (AABL52_05970) - 1145544..1146356 (+) 813 WP_000368939.1 pyruvate, water dikinase regulatory protein -
  AABL52_RS05975 (AABL52_05975) dnaG 1147207..1149003 (+) 1797 WP_000528226.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=974874 AABL52_RS05960 WP_000487012.1 1144028..1144774(+) (recO) [Bacillus paramobilis strain IMGN7]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=974874 AABL52_RS05960 WP_000487012.1 1144028..1144774(+) (recO) [Bacillus paramobilis strain IMGN7]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTGGCATCTGTTTCGCAACTTATGA
CACATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTACAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCACTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTATTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTCGGGAAGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment