Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ABXH20_RS04010 Genome accession   NZ_AP031328
Coordinates   711347..713659 (-) Length   770 a.a.
NCBI ID   WP_353300760.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706347..718659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS03990 (TthTF24_07830) - 707417..708853 (+) 1437 WP_011173333.1 V-type ATP synthase subunit B -
  ABXH20_RS03995 (TthTF24_07840) atpD 708864..709535 (+) 672 WP_011173332.1 V-type ATP synthase subunit D -
  ABXH20_RS04000 (TthTF24_07850) - 709628..710617 (+) 990 WP_353300759.1 pectin acetylesterase-family hydrolase -
  ABXH20_RS04005 (TthTF24_07860) - 710571..711347 (-) 777 WP_223968509.1 hypothetical protein -
  ABXH20_RS04010 (TthTF24_07870) recG/mmsA 711347..713659 (-) 2313 WP_353300760.1 ATP-dependent DNA helicase RecG Machinery gene
  ABXH20_RS04015 (TthTF24_07880) - 713675..714886 (+) 1212 WP_353300761.1 pitrilysin family protein -
  ABXH20_RS04020 (TthTF24_07890) - 714879..716099 (+) 1221 WP_353300762.1 pitrilysin family protein -
  ABXH20_RS04025 - 716089..716943 (+) 855 WP_353300763.1 DMT family transporter -
  ABXH20_RS04030 (TthTF24_07900) - 716964..717836 (+) 873 WP_244347199.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  ABXH20_RS04035 (TthTF24_07910) - 717908..718333 (+) 426 WP_353547579.1 ASCH domain-containing protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 85770.58 Da        Isoelectric Point: 9.5996

>NTDB_id=97487 ABXH20_RS04010 WP_353300760.1 711347..713659(-) (recG/mmsA) [Thermus thermophilus strain TF24]
MEGVTQEELKSRLLKPLLRELKDGARDRVVVGGLEALVQNLARPFPKLLELFRGYGEKPQEERKRVLQEALRLLEGQGPS
PKGQAQASSRRLSPSDPAHLLAPPQSRRKLAELGLRTVRDVLHNYPRRYEDRRTLPGARYLEEGQKATLAVKVLAKELVK
TPRKGMQLVQVKAQDAWGWRLTLVWFNQPWVLSQIEEGATLIVTGRVGRRNGLQLYVEHFEDEGTESLSTGRIVPIYPAK
EGISQAFLRRTVHRALELALPLPDPLEAYREDLGLMPYAEALKAIHFPEDEEALKRALLRLKFDEYLLLELKALLEAGGA
VLGRSFRMEEAWVEAFKKALPFPLTRAQERVMGEIAKDMQSPRQMARLLQGDVGSGKTVVAAFALFLAAKNGAQGALMAP
TEILARQHYQNLTRYLFPLGVRVELLLGSMTAKEKEAAMARLLSGEAQVAVGTHALIQEGVGFRDLGLAVVDEEHRFGVL
QRRALLKLAKAPPDVLVMSATPIPRSLALTLYGDLEVSVLDEMPPGRVPVKTKVLPHRLRLQAYAFAREEVRKGHQVFVV
APAIEESEELDLRAATTLYEELKGLLPGVRLALLHGKMPAREKDEVMEAFRRGDYDLLVSTTVVEVGVDIPKATLIIVEN
AERFGLAQLHQLRGRVGRGGLEGYAIFIAGEAGQKTLKRLKILEESTDGFYIAEMDLKLRGPGELRGTRQSGYPELKLGD
LAEDTGIIEKARALAKAIVDKDPTLDLPEHRALKEELRAQAERVGFREVI

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=97487 ABXH20_RS04010 WP_353300760.1 711347..713659(-) (recG/mmsA) [Thermus thermophilus strain TF24]
ATGGAAGGCGTGACGCAAGAGGAGCTCAAGTCCAGGCTCCTCAAGCCCCTTCTCCGGGAGCTCAAGGACGGGGCCAGGGA
CCGGGTGGTGGTGGGGGGCCTCGAGGCCTTGGTGCAGAACCTCGCCCGCCCCTTCCCCAAGCTCCTGGAGCTCTTCCGGG
GCTACGGGGAAAAGCCTCAGGAAGAGCGGAAGCGGGTCTTGCAGGAGGCCCTCCGCCTCCTGGAGGGCCAAGGCCCCTCC
CCAAAGGGCCAGGCCCAGGCCTCCTCCAGGAGGCTTAGCCCTTCCGATCCCGCCCACCTCCTCGCCCCCCCGCAAAGCCG
GAGGAAGCTTGCCGAGCTCGGCCTGCGCACGGTGCGGGACGTCCTCCACAACTACCCCCGCCGCTACGAGGACCGCAGAA
CCCTCCCCGGGGCGCGCTACCTGGAGGAAGGGCAGAAGGCCACCCTGGCCGTGAAGGTCCTCGCCAAGGAGCTCGTCAAG
ACCCCCAGGAAGGGGATGCAGCTCGTCCAGGTGAAGGCCCAGGACGCCTGGGGGTGGCGCCTCACCCTGGTCTGGTTCAA
CCAGCCCTGGGTTCTCTCCCAGATTGAGGAGGGGGCCACCCTCATCGTCACCGGGAGGGTAGGGCGGCGAAACGGCCTCC
AGCTCTACGTGGAGCACTTTGAGGACGAGGGCACCGAGTCCCTCTCCACCGGGCGGATCGTCCCCATCTACCCCGCCAAG
GAGGGGATAAGCCAGGCCTTCCTCCGCCGCACCGTCCACAGGGCCCTGGAGCTCGCCCTCCCCCTCCCCGACCCCCTGGA
GGCCTACCGGGAGGACCTGGGCCTCATGCCCTACGCCGAGGCCCTGAAGGCCATTCACTTCCCCGAGGACGAGGAGGCCT
TGAAGCGGGCCCTCCTCCGCCTCAAGTTTGACGAGTACCTCCTCCTGGAGCTCAAGGCCCTCCTGGAGGCGGGAGGGGCG
GTGCTGGGCCGGAGCTTCCGGATGGAGGAAGCCTGGGTGGAGGCCTTCAAAAAGGCCCTCCCCTTCCCCCTCACCCGGGC
CCAGGAACGGGTCATGGGGGAGATCGCCAAGGACATGCAAAGCCCGAGGCAGATGGCCCGCCTCCTCCAGGGGGACGTGG
GCTCGGGGAAGACGGTGGTGGCGGCCTTCGCCCTCTTCCTCGCGGCCAAGAACGGGGCCCAGGGGGCCCTCATGGCCCCC
ACGGAGATCCTGGCCCGGCAGCACTACCAGAACCTCACCCGCTACCTCTTCCCCTTGGGGGTGAGGGTGGAGCTCCTCCT
GGGCTCCATGACGGCCAAGGAGAAGGAGGCCGCCATGGCCCGGCTCCTCTCGGGGGAGGCCCAGGTGGCCGTGGGCACCC
ACGCCCTCATCCAGGAGGGAGTGGGGTTTAGGGACCTGGGCCTCGCCGTGGTGGACGAGGAGCACCGCTTCGGGGTTCTG
CAGCGCCGGGCCCTCCTCAAGCTGGCCAAGGCGCCGCCAGACGTCCTCGTCATGTCCGCCACCCCCATCCCCCGCTCCCT
GGCCTTAACCCTCTACGGGGACCTCGAGGTGAGCGTCCTGGACGAGATGCCCCCAGGACGCGTCCCGGTGAAGACCAAGG
TCCTCCCCCACCGCCTCCGCCTCCAGGCCTACGCCTTCGCCCGGGAGGAGGTGAGAAAGGGCCACCAGGTCTTCGTGGTG
GCCCCGGCCATTGAGGAGAGCGAGGAGCTGGACCTCCGGGCGGCCACCACCCTCTACGAGGAGCTTAAAGGCCTCCTCCC
CGGGGTGCGCCTGGCCCTCCTCCACGGGAAGATGCCCGCCCGGGAGAAGGACGAGGTGATGGAGGCCTTCCGGCGCGGGG
ACTACGACCTTCTGGTCTCCACCACGGTGGTGGAGGTGGGGGTGGACATCCCCAAGGCCACCCTCATCATCGTGGAGAAC
GCCGAGCGCTTCGGCCTCGCCCAGCTCCACCAGCTAAGGGGCCGGGTGGGCCGGGGGGGGCTTGAGGGCTACGCCATCTT
CATCGCGGGGGAGGCGGGCCAGAAGACCCTGAAGCGCCTCAAGATCCTGGAGGAGTCCACGGACGGCTTTTACATCGCCG
AGATGGACCTGAAGCTCAGGGGCCCGGGGGAGCTTCGCGGCACGCGGCAGTCAGGCTACCCCGAGCTCAAGCTCGGCGAC
CTCGCCGAGGACACGGGGATCATTGAGAAGGCCCGGGCCCTGGCCAAGGCCATCGTGGACAAGGACCCCACCCTGGACCT
CCCCGAGCACCGGGCCCTCAAGGAGGAGCTCAGGGCCCAGGCGGAGCGGGTGGGCTTCCGGGAAGTGATCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(547-660)

DEAD/DEAH box helicase (DEAD)

(348-503)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(687-759)

RecG wedge domain (RecG_wedge)

(108-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

43.004

88.182

0.379
  recG/mmsA Streptococcus pneumoniae R36A

43.004

88.182

0.379

Multiple sequence alignment