Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACMX8W_RS11615 Genome accession   NZ_CP180439
Coordinates   2250943..2252079 (+) Length   378 a.a.
NCBI ID   WP_068947494.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2245943..2257079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS11590 (ACMX8W_11590) - 2247874..2248692 (+) 819 Protein_2231 hypothetical protein -
  ACMX8W_RS11595 (ACMX8W_11595) - 2248672..2248908 (+) 237 WP_174616783.1 hypothetical protein -
  ACMX8W_RS11600 (ACMX8W_11600) blyA 2248932..2250035 (+) 1104 WP_169024453.1 N-acetylmuramoyl-L-alanine amidase BlyA -
  ACMX8W_RS11605 (ACMX8W_11605) - 2250151..2250543 (+) 393 WP_010328137.1 hypothetical protein -
  ACMX8W_RS11610 (ACMX8W_11610) - 2250564..2250815 (+) 252 WP_042976275.1 phage holin -
  ACMX8W_RS11615 (ACMX8W_11615) rapC 2250943..2252079 (+) 1137 WP_068947494.1 Rap family tetratricopeptide repeat protein Regulator
  ACMX8W_RS11620 (ACMX8W_11620) - 2252069..2252245 (+) 177 WP_042976278.1 hypothetical protein -
  ACMX8W_RS11625 (ACMX8W_11625) uvrX 2252287..2253537 (-) 1251 WP_128751229.1 DNA polymerase thumb domain-containing protein -
  ACMX8W_RS11630 (ACMX8W_11630) yolD 2253530..2253862 (-) 333 WP_121590876.1 YolD-like family protein -
  ACMX8W_RS11635 (ACMX8W_11635) - 2254030..2255028 (+) 999 WP_041352977.1 hypothetical protein -
  ACMX8W_RS11640 (ACMX8W_11640) - 2255189..2255272 (+) 84 WP_082786706.1 putative holin-like toxin -
  ACMX8W_RS11645 (ACMX8W_11645) - 2255597..2256193 (-) 597 WP_072692679.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44847.08 Da        Isoelectric Point: 5.0660

>NTDB_id=974868 ACMX8W_RS11615 WP_068947494.1 2250943..2252079(+) (rapC) [Bacillus subtilis strain Z-294]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=974868 ACMX8W_RS11615 WP_068947494.1 2250943..2252079(+) (rapC) [Bacillus subtilis strain Z-294]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTGTGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(343-367)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.031

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46