Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WN949_RS14985 Genome accession   NZ_CP151088
Coordinates   3146697..3147311 (-) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter gillenii strain DW61     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141697..3152311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN949_RS14970 helD 3141921..3143975 (-) 2055 WP_341516480.1 DNA helicase IV -
  WN949_RS14975 - 3144101..3144547 (+) 447 WP_096757638.1 YccF domain-containing protein -
  WN949_RS14980 yccS 3144566..3146719 (+) 2154 WP_096759437.1 YccS family putative transporter -
  WN949_RS14985 sxy/tfoX 3146697..3147311 (-) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  WN949_RS14990 sulA 3147528..3148037 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  WN949_RS14995 ompA 3148393..3149439 (+) 1047 WP_096759438.1 porin OmpA -
  WN949_RS15000 matP 3149538..3149990 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  WN949_RS15005 - 3150176..3151936 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=974805 WN949_RS14985 WP_117341734.1 3146697..3147311(-) (sxy/tfoX) [Citrobacter gillenii strain DW61]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=974805 WN949_RS14985 WP_117341734.1 3146697..3147311(-) (sxy/tfoX) [Citrobacter gillenii strain DW61]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696

Multiple sequence alignment