Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACMX77_RS19985 Genome accession   NZ_CP180438
Coordinates   3816629..3817762 (-) Length   377 a.a.
NCBI ID   WP_047183329.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3811629..3822762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS19945 (ACMX77_19945) ywnA 3811759..3812160 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ACMX77_RS19950 (ACMX77_19950) ureC 3812295..3814004 (-) 1710 WP_047183328.1 urease subunit alpha -
  ACMX77_RS19955 (ACMX77_19955) ureB 3814001..3814375 (-) 375 WP_015384879.1 urease subunit beta -
  ACMX77_RS19960 (ACMX77_19960) ureA 3814372..3814689 (-) 318 WP_003227724.1 urease subunit gamma -
  ACMX77_RS19965 (ACMX77_19965) - 3814884..3815006 (-) 123 WP_250540415.1 hypothetical protein -
  ACMX77_RS19970 (ACMX77_19970) - 3815309..3815521 (-) 213 Protein_3876 urea ABC transporter substrate-binding protein -
  ACMX77_RS19975 (ACMX77_19975) csbD 3815734..3815922 (-) 189 WP_003227718.1 stress response protein CsbD -
  ACMX77_RS19980 (ACMX77_19980) - 3815995..3816474 (-) 480 WP_026113664.1 hypothetical protein -
  ACMX77_RS19985 (ACMX77_19985) rapC 3816629..3817762 (-) 1134 WP_047183329.1 response regulator aspartate phosphatase RapB Regulator
  ACMX77_RS19990 (ACMX77_19990) moaA 3817955..3818980 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ACMX77_RS19995 (ACMX77_19995) fdhD 3818996..3819784 (-) 789 WP_047183330.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACMX77_RS20000 (ACMX77_20000) - 3820030..3820191 (-) 162 WP_003227706.1 hypothetical protein -
  ACMX77_RS20005 (ACMX77_20005) ywmD 3820286..3820960 (-) 675 WP_003243553.1 vWA domain-containing protein -
  ACMX77_RS20010 (ACMX77_20010) - 3821013..3821153 (-) 141 WP_144413664.1 hypothetical protein -
  ACMX77_RS20015 (ACMX77_20015) ywmC 3821284..3821967 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44956.07 Da        Isoelectric Point: 4.7494

>NTDB_id=974776 ACMX77_RS19985 WP_047183329.1 3816629..3817762(-) (rapC) [Bacillus subtilis strain W-2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKANDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AESFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFNYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=974776 ACMX77_RS19985 WP_047183329.1 3816629..3817762(-) (rapC) [Bacillus subtilis strain W-2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTAATGATTTTTACAGAGTCAGAAGAATTCAATGTCATTTTGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATCCTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCTTTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTAATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

41.867

99.469

0.416