Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACMX77_RS14085 Genome accession   NZ_CP180438
Coordinates   2675157..2676284 (+) Length   375 a.a.
NCBI ID   WP_174616726.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670157..2681284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS14060 (ACMX77_14060) nucA/comI 2670543..2670953 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  ACMX77_RS14065 (ACMX77_14065) - 2671149..2671499 (+) 351 Protein_2724 sigma-70 family RNA polymerase sigma factor -
  ACMX77_RS14070 (ACMX77_14070) spoIVCA 2671527..2672987 (-) 1461 WP_253206441.1 site-specific DNA recombinase SpoIVCA -
  ACMX77_RS14075 (ACMX77_14075) - 2672945..2673123 (-) 179 Protein_2726 hypothetical protein -
  ACMX77_RS14080 (ACMX77_14080) mauJ 2673425..2674951 (+) 1527 WP_174616725.1 methylamine utilization protein MauJ -
  ACMX77_RS14085 (ACMX77_14085) rapC 2675157..2676284 (+) 1128 WP_174616726.1 response regulator aspartate phosphatase RapE Regulator
  ACMX77_RS14090 (ACMX77_14090) phrE 2676274..2676408 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  ACMX77_RS14095 (ACMX77_14095) - 2676518..2676677 (+) 160 Protein_2730 hypothetical protein -
  ACMX77_RS14100 (ACMX77_14100) - 2677046..2678971 (+) 1926 WP_174616727.1 ribonuclease YeeF family protein -
  ACMX77_RS14105 (ACMX77_14105) - 2678985..2679272 (+) 288 WP_174616728.1 hypothetical protein -
  ACMX77_RS14110 (ACMX77_14110) - 2679382..2680266 (-) 885 WP_172850651.1 DMT family transporter -
  ACMX77_RS14115 (ACMX77_14115) - 2680341..2680514 (+) 174 WP_216119230.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44667.48 Da        Isoelectric Point: 7.3392

>NTDB_id=974740 ACMX77_RS14085 WP_174616726.1 2675157..2676284(+) (rapC) [Bacillus subtilis strain W-2]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDESRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNDEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAIDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=974740 ACMX77_RS14085 WP_174616726.1 2675157..2676284(+) (rapC) [Bacillus subtilis strain W-2]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCACAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGACATAAGATCATGTTGGAATACACGCTGCCATCTGATGAAAGCCGAATGGAACTTTCAGAATATTTA
AAGAAAATTGAAGGTCATAAGAAAAAACTAGACAATATGCGGGCGTATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGATGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCAACGATCTCCGACAAAATTG
AAAAAGCTGAGTTTTATTTTAAGTTATCCGAAGTCTATTATCATATGAAAATGACTCACATCTCAATGCACTACGCTGAA
CTTTCATACAATATCTATAAGAAACACGAGCTTTATTCTGTTCGGCGTATTCAATGTCATTTTGTGATTGCCGGCAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTTCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCACATCTATGCCACTGCATTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACCTAAATAAGGCTGCACGT
TATATCGAACAAGCCTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCATGACTTAGCATTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGCGCCATAGACTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_12)

(184-246)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384