Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABXH20_RS02505 Genome accession   NZ_AP031328
Coordinates   431202..431669 (+) Length   155 a.a.
NCBI ID   WP_353300593.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 426202..436669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS02470 (TthTF24_04830) rnhA 426398..426898 (-) 501 WP_165739101.1 ribonuclease HI -
  ABXH20_RS02475 (TthTF24_04840) - 426895..427281 (-) 387 WP_014510713.1 VOC family protein -
  ABXH20_RS02480 (TthTF24_04850) - 427281..427568 (-) 288 WP_143586377.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  ABXH20_RS02485 (TthTF24_04860) - 427593..428156 (-) 564 WP_165739100.1 Uma2 family endonuclease -
  ABXH20_RS02490 (TthTF24_04870) guaA 428156..429667 (-) 1512 WP_353300592.1 glutamine-hydrolyzing GMP synthase -
  ABXH20_RS02495 (TthTF24_04880) - 429680..430291 (-) 612 WP_008633168.1 circadian clock protein KaiC -
  ABXH20_RS02500 (TthTF24_04890) - 430336..431163 (-) 828 WP_165739099.1 KaiC domain-containing protein -
  ABXH20_RS02505 (TthTF24_04900) luxS 431202..431669 (+) 468 WP_353300593.1 S-ribosylhomocysteine lyase Regulator
  ABXH20_RS02510 (TthTF24_04910) mtnN 431666..432328 (+) 663 WP_353300594.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  ABXH20_RS02515 (TthTF24_04920) - 432343..433251 (+) 909 WP_353300595.1 ribose-phosphate pyrophosphokinase -
  ABXH20_RS02520 (TthTF24_04930) uvrC 433316..435088 (-) 1773 WP_353300596.1 excinuclease ABC subunit UvrC -
  ABXH20_RS02525 (TthTF24_04940) - 435111..436073 (+) 963 WP_353300597.1 membrane dipeptidase -
  ABXH20_RS02530 (TthTF24_04950) - 436047..436460 (-) 414 WP_353300598.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16763.33 Da        Isoelectric Point: 7.0507

>NTDB_id=97473 ABXH20_RS02505 WP_353300593.1 431202..431669(+) (luxS) [Thermus thermophilus strain TF24]
MAEVESFSLDHTKVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGPVPGASFKECGNYRDHDLPGAKAWAEKVLKAGLRVQATVPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=97473 ABXH20_RS02505 WP_353300593.1 431202..431669(+) (luxS) [Thermus thermophilus strain TF24]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAAGGTCAAGGCCCCCTACGTACGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCAGGGTATTTGCGGGACCACCTCCCGGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGCCCCGTCCCCGGGGCGAGCTTCAAGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTAAAGGCGGGGCTTAGGGTCCAGGCCACCGTTCCCTTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.558

99.355

0.413