Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QDT75_RS02355 Genome accession   NZ_CP151078
Coordinates   481951..482835 (+) Length   294 a.a.
NCBI ID   WP_033853982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476951..487835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS02330 (QDT75_02330) - 477349..478596 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  QDT75_RS02335 (QDT75_02335) wrbA 478884..479477 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  QDT75_RS02340 (QDT75_02340) - 479530..480105 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  QDT75_RS02345 (QDT75_02345) - 480178..480891 (-) 714 WP_000201542.1 DUF3108 domain-containing protein -
  QDT75_RS02350 (QDT75_02350) - 481049..481720 (-) 672 WP_279722745.1 hypothetical protein -
  QDT75_RS02355 (QDT75_02355) tonB2 481951..482835 (+) 885 WP_033853982.1 energy transducer TonB Machinery gene
  QDT75_RS02360 (QDT75_02360) ybeY 482925..483401 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  QDT75_RS02365 (QDT75_02365) - 483411..484499 (-) 1089 WP_000122983.1 PhoH family protein -
  QDT75_RS02370 (QDT75_02370) miaB 484537..485988 (-) 1452 WP_279722746.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33564.45 Da        Isoelectric Point: 9.4087

>NTDB_id=974722 QDT75_RS02355 WP_033853982.1 481951..482835(+) (tonB2) [Acinetobacter baumannii strain PUMA0052]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=974722 QDT75_RS02355 WP_033853982.1 481951..482835(+) (tonB2) [Acinetobacter baumannii strain PUMA0052]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCAGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAACTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAGCAATTACAAAGTCAGTTTCAGGCAAAGGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAGCAGTTAAAAGGTGAAGTTCGTCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment