Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABC73_RS24585 Genome accession   NZ_CP151076
Coordinates   5300641..5302008 (-) Length   455 a.a.
NCBI ID   WP_341521326.1    Uniprot ID   -
Organism   Pseudomonas sp. G.S.17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5295641..5307008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABC73_RS24565 (AABC73_24575) yjiA 5296495..5297472 (-) 978 WP_341521323.1 GTPase -
  AABC73_RS24570 (AABC73_24580) - 5297555..5297752 (-) 198 WP_065836155.1 YbdD/YjiX family protein -
  AABC73_RS24575 (AABC73_24585) - 5297780..5299855 (-) 2076 WP_341521324.1 carbon starvation CstA family protein -
  AABC73_RS24580 (AABC73_24590) - 5300143..5300511 (+) 369 WP_341521325.1 PilZ domain-containing protein -
  AABC73_RS24585 (AABC73_24595) radA 5300641..5302008 (-) 1368 WP_341521326.1 DNA repair protein RadA Machinery gene
  AABC73_RS24590 (AABC73_24600) mscL 5302203..5302649 (+) 447 WP_341521327.1 large-conductance mechanosensitive channel protein MscL -
  AABC73_RS24595 (AABC73_24605) - 5302758..5303534 (-) 777 WP_341521328.1 ferredoxin--NADP reductase -
  AABC73_RS24600 (AABC73_24610) - 5303883..5304116 (+) 234 WP_341521329.1 helix-turn-helix transcriptional regulator -
  AABC73_RS24605 (AABC73_24615) - 5304237..5305361 (+) 1125 WP_341521330.1 methyltransferase -
  AABC73_RS24610 (AABC73_24620) - 5305429..5305599 (-) 171 WP_331153143.1 DUF2474 domain-containing protein -
  AABC73_RS24615 (AABC73_24625) cydB 5305652..5306659 (-) 1008 WP_341521331.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48826.34 Da        Isoelectric Point: 6.8990

>NTDB_id=974704 AABC73_RS24585 WP_341521326.1 5300641..5302008(-) (radA) [Pseudomonas sp. G.S.17]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLVETVLESGSAAPPSGRSSWTGQQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAERMPALYVTGEESQQQVAMRARRLGLPQDKLKVMTETCIESIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKANAPKESPPGLQIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=974704 AABC73_RS24585 WP_341521326.1 5300641..5302008(-) (radA) [Pseudomonas sp. G.S.17]
ATGGCCAAGGCCAAACGCATGTACGGTTGCACCGAGTGCGGTGCGACCTTTCCCAAGTGGGCCGGTCAGTGCAGCGAATG
CGGTGCCTGGAACACATTGGTTGAAACCGTTCTGGAAAGCGGTTCGGCAGCGCCGCCCAGTGGCCGTTCCAGCTGGACCG
GCCAGCAGGCGCAGATCCGCACGCTGGCAGAAGTCAGCGTCGAGGAAATTCCGCGCTTTTCGACCAACTCCGCCGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTCGATGGCTCTGTCGTCCTGATTGGCGGCGATCCGGGCATCGGCAAATCCACCAT
CTTGCTGCAAACCCTGTGTGCTATCGCCGAGCGCATGCCGGCGCTGTATGTCACAGGTGAAGAATCACAGCAGCAGGTCG
CCATGCGCGCCCGTCGTCTGGGCTTGCCTCAGGACAAGCTCAAGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGAAGGTCGAAAAGCCGAAGGTCATGGTCATCGACTCGATCCAGACGATTTTTACCGAGCAACTGCAATCCGCGCC
GGGCGGCGTTTCCCAGGTGCGGGAAAGCGCCGCGTTGCTGGTGCGTTATGCCAAGCAAAGTGGCACGGCGATTTTCCTTG
TGGGTCACGTCACCAAGGAAGGCGCGCTGGCCGGTCCTCGGGTTCTCGAACACATGGTTGATACGGTGTTGTACTTCGAA
GGCGAATCCGATGGACGCCTGCGTCTGCTGCGCGCGGTGAAGAATCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACTGACAAAGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACGCGCGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACGCGACCAATGCTGGTCGAAGTGCAGGCGCTGGTGGATGACAGTCATTTGGCC
AATCCACGCCGGGTCACCCTCGGGCTGGATCAGAATCGCCTGGCGATGCTGCTGGCTGTCCTGCATCGCCACGGTGGGAT
TCCCACCCACGATCAGGATGTTTTCCTCAATGTGGTCGGCGGTGTCAAAGTGCTGGAAACCGCATCCGACCTGGCCTTGA
TGGCAGCGGTGATGTCCAGCCTGCGCAATCGTCCGCTGCCTCACGACTTGCTGGTGTTCGGTGAAGTCGGGCTGTCTGGC
GAAGTGCGACCGGTGCCCAGCGGCCAGGAGCGCTTGAAAGAAGCGGCCAAACACGGCTTCAAACGCGCCATCGTGCCCAA
GGCCAATGCGCCGAAGGAATCACCGCCAGGCTTGCAGATTATTGGTGTGACGCGGCTGGAACAGGCGCTGGATGCGTTGT
TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.368

100

0.475
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473

Multiple sequence alignment