Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACMX77_RS06830 Genome accession   NZ_CP180438
Coordinates   1309601..1310737 (+) Length   378 a.a.
NCBI ID   WP_080030661.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304601..1315737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS06810 (ACMX77_06810) uxaA 1305058..1306551 (+) 1494 WP_047182477.1 UxaA family hydrolase -
  ACMX77_RS06815 (ACMX77_06815) yjnA 1306590..1307354 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ACMX77_RS06820 (ACMX77_06820) bstD 1307572..1308036 (-) 465 WP_047182478.1 DinB family protein -
  ACMX77_RS06825 (ACMX77_06825) yjoB 1308185..1309456 (+) 1272 WP_015383418.1 ATPase YjoB -
  ACMX77_RS06830 (ACMX77_06830) rapC 1309601..1310737 (+) 1137 WP_080030661.1 response regulator aspartate phosphatase RapA Regulator
  ACMX77_RS06835 (ACMX77_06835) phrA 1310727..1310861 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACMX77_RS06840 (ACMX77_06840) yjpA 1310891..1311148 (-) 258 WP_003232731.1 YciI family protein -
  ACMX77_RS06845 (ACMX77_06845) xlyB 1311268..1312221 (+) 954 WP_015483118.1 N-acetylmuramoyl-L-alanine amidase -
  ACMX77_RS06850 (ACMX77_06850) yjqA 1312260..1312637 (-) 378 WP_047182479.1 PH domain-containing protein -
  ACMX77_RS06855 (ACMX77_06855) pghB 1312742..1313344 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  ACMX77_RS06860 (ACMX77_06860) xpdC 1313421..1314257 (+) 837 WP_003245071.1 manganese catalase family protein -
  ACMX77_RS06865 (ACMX77_06865) xkdA 1314301..1314897 (-) 597 WP_015483120.1 ImmA/IrrE family metallo-endopeptidase -
  ACMX77_RS06870 (ACMX77_06870) xre 1315060..1315401 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45032.20 Da        Isoelectric Point: 4.7189

>NTDB_id=974690 ACMX77_RS06830 WP_080030661.1 1309601..1310737(+) (rapC) [Bacillus subtilis strain W-2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=974690 ACMX77_RS06830 WP_080030661.1 1309601..1310737(+) (rapC) [Bacillus subtilis strain W-2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGATTATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415