Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AB4Y54_RS10465 Genome accession   NZ_AP031325
Coordinates   1916948..1917757 (-) Length   269 a.a.
NCBI ID   WP_014510984.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF21     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911948..1922757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS10435 (TthTF21_20550) rsmI 1912110..1912904 (-) 795 WP_353300372.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB4Y54_RS10440 (TthTF21_20560) - 1912906..1913400 (-) 495 WP_124105239.1 TFIIB-type zinc ribbon-containing protein -
  AB4Y54_RS10445 (TthTF21_20570) - 1913463..1913990 (-) 528 WP_011173971.1 inorganic diphosphatase -
  AB4Y54_RS10450 (TthTF21_20580) - 1914023..1914649 (+) 627 WP_143591818.1 YcxB family protein -
  AB4Y54_RS10455 (TthTF21_20590) comEA 1914622..1914930 (+) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB4Y54_RS10460 (TthTF21_20600) comA/comEC 1914927..1916960 (+) 2034 WP_353300373.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB4Y54_RS10465 (TthTF21_20610) spo0J 1916948..1917757 (-) 810 WP_014510984.1 ParB/RepB/Spo0J family partition protein Regulator
  AB4Y54_RS10470 (TthTF21_20620) soj 1917741..1918490 (-) 750 WP_353300374.1 chromosome-partitioning ATPase Soj -
  AB4Y54_RS10475 (TthTF21_20630) rsmG 1918484..1919233 (-) 750 WP_353300375.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29786.69 Da        Isoelectric Point: 10.1293

>NTDB_id=97462 AB4Y54_RS10465 WP_014510984.1 1916948..1917757(-) (spo0J) [Thermus thermophilus strain TF21]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRPPEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=97462 AB4Y54_RS10465 WP_014510984.1 1916948..1917757(-) (spo0J) [Thermus thermophilus strain TF21]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTTAGGGAGCGCCTGG
CCATGGCCCCCAAGCGCCCCCCCGAGCCCTCCCCCCTCTCCCTGGAACTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42

92.937

0.39

Multiple sequence alignment