Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB4Y54_RS09505 | Genome accession | NZ_AP031325 |
| Coordinates | 1744831..1746021 (-) | Length | 396 a.a. |
| NCBI ID | WP_353300271.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain TF21 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1739831..1751021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4Y54_RS09470 (TthTF21_18650) | phoU | 1740029..1740691 (-) | 663 | WP_011174206.1 | phosphate signaling complex protein PhoU | - |
| AB4Y54_RS09475 (TthTF21_18660) | - | 1740706..1741599 (-) | 894 | WP_244344456.1 | ATP-binding protein | - |
| AB4Y54_RS09480 (TthTF21_18670) | - | 1741596..1742267 (-) | 672 | WP_353300268.1 | response regulator transcription factor | - |
| AB4Y54_RS09485 (TthTF21_18680) | - | 1742327..1743454 (-) | 1128 | WP_353300269.1 | alanine--tRNA ligase-related protein | - |
| AB4Y54_RS09490 (TthTF21_18690) | - | 1743474..1743671 (+) | 198 | WP_014630250.1 | hypothetical protein | - |
| AB4Y54_RS09495 (TthTF21_18700) | - | 1743668..1744399 (+) | 732 | WP_353300270.1 | pseudouridine synthase | - |
| AB4Y54_RS09500 (TthTF21_18710) | - | 1744367..1744834 (-) | 468 | WP_014630252.1 | hypothetical protein | - |
| AB4Y54_RS09505 (TthTF21_18720) | pilC | 1744831..1746021 (-) | 1191 | WP_353300271.1 | type II secretion system F family protein | Machinery gene |
| AB4Y54_RS09510 (TthTF21_18730) | pilB/pilB1 | 1746025..1747671 (-) | 1647 | WP_353300272.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| AB4Y54_RS09515 (TthTF21_18740) | - | 1747649..1748836 (-) | 1188 | WP_244344461.1 | hypothetical protein | - |
| AB4Y54_RS09520 (TthTF21_18750) | - | 1748846..1749685 (-) | 840 | WP_353300273.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AB4Y54_RS09525 (TthTF21_18760) | - | 1749682..1750428 (-) | 747 | WP_353300274.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AB4Y54_RS09530 (TthTF21_18770) | - | 1750425..1750817 (-) | 393 | WP_353300275.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 43961.83 Da Isoelectric Point: 10.0820
>NTDB_id=97453 AB4Y54_RS09505 WP_353300271.1 1744831..1746021(-) (pilC) [Thermus thermophilus strain TF21]
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVTQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWHRTPGGAR
ALDGLLLRLPLVGPILHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQATFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVTQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWHRTPGGAR
ALDGLLLRLPLVGPILHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQATFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR
Nucleotide
Download Length: 1191 bp
>NTDB_id=97453 AB4Y54_RS09505 WP_353300271.1 1744831..1746021(-) (pilC) [Thermus thermophilus strain TF21]
ATGCGTTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
GGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CTCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGACCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCTATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCTTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTTTC
CCGGCTTTATGGGGCAGCGGGAGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGTGCCTTCTACCTCCTTCGGGCCTGGCACCGGACCCCGGGAGGGGCGAGG
GCCTTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCATCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCC
TGGCCGAGGCCCTGGACCGGGTGCTGGAACGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAGGCCCTC
TTCCTCCCCATCCTGGTGCGGCTCGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGACCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTTGCCCTGTATCTGCCCCTCTTTGACTTGTCCCGGATCCTGCGCCGATGA
ATGCGTTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
GGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CTCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGACCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCTATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCTTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTTTC
CCGGCTTTATGGGGCAGCGGGAGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGTGCCTTCTACCTCCTTCGGGCCTGGCACCGGACCCCGGGAGGGGCGAGG
GCCTTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCATCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCC
TGGCCGAGGCCCTGGACCGGGTGCTGGAACGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAGGCCCTC
TTCCTCCCCATCCTGGTGCGGCTCGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGACCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTTGCCCTGTATCTGCCCCTCTTTGACTTGTCCCGGATCCTGCGCCGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
35.661 |
100 |
0.361 |