Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK8DC_RS08790 Genome accession   NZ_CP179883
Coordinates   1851845..1852480 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain MRSN15091     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846845..1857480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DC_RS08765 (ACK8DC_08765) - 1847685..1848698 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  ACK8DC_RS08770 (ACK8DC_08770) murU 1848698..1849387 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ACK8DC_RS08775 (ACK8DC_08775) rsmG 1849475..1850107 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACK8DC_RS08780 (ACK8DC_08780) - 1850129..1850911 (+) 783 WP_000057212.1 ParA family protein -
  ACK8DC_RS08785 (ACK8DC_08785) - 1850908..1851795 (+) 888 WP_004747388.1 ParB/RepB/Spo0J family partition protein -
  ACK8DC_RS08790 (ACK8DC_08790) exbB 1851845..1852480 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK8DC_RS08795 (ACK8DC_08795) - 1852496..1852924 (+) 429 WP_000669683.1 ExbD/TolR family protein -
  ACK8DC_RS08800 (ACK8DC_08800) msbA 1852921..1854648 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ACK8DC_RS08805 (ACK8DC_08805) lpxK 1854651..1855661 (+) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  ACK8DC_RS08810 (ACK8DC_08810) kdsB 1855671..1856432 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK8DC_RS08815 (ACK8DC_08815) - 1856444..1857424 (+) 981 WP_004747384.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=974431 ACK8DC_RS08790 WP_000264037.1 1851845..1852480(+) (exbB) [Acinetobacter baumannii strain MRSN15091]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=974431 ACK8DC_RS08790 WP_000264037.1 1851845..1852480(+) (exbB) [Acinetobacter baumannii strain MRSN15091]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393