Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK8DD_RS10060 Genome accession   NZ_CP179880
Coordinates   2125644..2126279 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain MRSN548254     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2120644..2131279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS10035 (ACK8DD_10035) - 2120700..2121680 (-) 981 WP_004747384.1 DNA polymerase III, delta' subunit -
  ACK8DD_RS10040 (ACK8DD_10040) kdsB 2121692..2122453 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK8DD_RS10045 (ACK8DD_10045) lpxK 2122463..2123473 (-) 1011 WP_000050454.1 tetraacyldisaccharide 4'-kinase -
  ACK8DD_RS10050 (ACK8DD_10050) msbA 2123476..2125203 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ACK8DD_RS10055 (ACK8DD_10055) - 2125200..2125628 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  ACK8DD_RS10060 (ACK8DD_10060) exbB 2125644..2126279 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK8DD_RS10065 (ACK8DD_10065) - 2126329..2127216 (-) 888 WP_004747388.1 ParB/RepB/Spo0J family partition protein -
  ACK8DD_RS10070 (ACK8DD_10070) - 2127213..2127995 (-) 783 WP_000057212.1 ParA family protein -
  ACK8DD_RS10075 (ACK8DD_10075) rsmG 2128017..2128649 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACK8DD_RS10080 (ACK8DD_10080) murU 2128737..2129426 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ACK8DD_RS10085 (ACK8DD_10085) - 2129426..2130439 (-) 1014 WP_415679833.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=974362 ACK8DD_RS10060 WP_000264037.1 2125644..2126279(-) (exbB) [Acinetobacter baumannii strain MRSN548254]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=974362 ACK8DD_RS10060 WP_000264037.1 2125644..2126279(-) (exbB) [Acinetobacter baumannii strain MRSN548254]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment