Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACK8DD_RS04090 Genome accession   NZ_CP179880
Coordinates   878580..879968 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain MRSN548254     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873580..884968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS04065 (ACK8DD_04065) fdhD 874015..874806 (+) 792 WP_000187643.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACK8DD_RS04070 (ACK8DD_04070) - 874926..875318 (+) 393 WP_000119198.1 YkvA family protein -
  ACK8DD_RS04075 (ACK8DD_04075) - 875423..876490 (+) 1068 WP_004746365.1 4-phosphoerythronate dehydrogenase -
  ACK8DD_RS04080 (ACK8DD_04080) epmA 876487..877461 (+) 975 WP_004746368.1 EF-P lysine aminoacylase EpmA -
  ACK8DD_RS04085 (ACK8DD_04085) - 877520..878497 (-) 978 WP_000451848.1 Tim44 domain-containing protein -
  ACK8DD_RS04090 (ACK8DD_04090) radA/sms 878580..879968 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ACK8DD_RS04095 (ACK8DD_04095) - 880458..881864 (+) 1407 WP_000070815.1 amino acid permease -
  ACK8DD_RS04100 (ACK8DD_04100) lptM 882005..882229 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  ACK8DD_RS04105 (ACK8DD_04105) lysA 882252..883502 (+) 1251 WP_004746373.1 diaminopimelate decarboxylase -
  ACK8DD_RS04110 (ACK8DD_04110) dapF 883508..884353 (+) 846 WP_000923480.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=974345 ACK8DD_RS04090 WP_000048860.1 878580..879968(-) (radA/sms) [Acinetobacter baumannii strain MRSN548254]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=974345 ACK8DD_RS04090 WP_000048860.1 878580..879968(-) (radA/sms) [Acinetobacter baumannii strain MRSN548254]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCTAACATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGCGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCAGGTATTGGTAAATCGAC
CATTCTTTTGCAAACTGCGACCCATATGGCAAGCGCAAAAAGCTCTGCACTTTATATTACGGGTGAGGAATCTTTATCTC
AGGTGGCGCTTCGTGCGCAACGTCTTGACCTGCCAACAGACCAATTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAGGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CAGGTTCAATTGTCATGATTAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACAGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATTTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCTTGCATGAAGCCTTGACTGAGG
CGATGCAACTCAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422