Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACK8DD_RS03155 Genome accession   NZ_CP179880
Coordinates   652961..653323 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain MRSN548254     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647961..658323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS03140 (ACK8DD_03140) - 650455..651573 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  ACK8DD_RS03145 (ACK8DD_03145) - 651633..652271 (-) 639 WP_001985941.1 hypothetical protein -
  ACK8DD_RS03150 (ACK8DD_03150) pilG 652554..652937 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACK8DD_RS03155 (ACK8DD_03155) pilH 652961..653323 (+) 363 WP_000101096.1 response regulator Machinery gene
  ACK8DD_RS03160 (ACK8DD_03160) - 653384..653920 (+) 537 WP_396231563.1 chemotaxis protein CheW -
  ACK8DD_RS03165 (ACK8DD_03165) - 653967..656045 (+) 2079 WP_004745994.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=974342 ACK8DD_RS03155 WP_000101096.1 652961..653323(+) (pilH) [Acinetobacter baumannii strain MRSN548254]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=974342 ACK8DD_RS03155 WP_000101096.1 652961..653323(+) (pilH) [Acinetobacter baumannii strain MRSN548254]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392