Detailed information NTG0974175

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABD46_RS02860
• Genome accession: NZ_CP150947
• Coordinates: 589190..590179 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-HL-202212
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 584190..595179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD46_RS02825 (AABD46_02825)	ftsB	584198..584479 (+)	282	WP_005455577.1	cell division protein FtsB	-
AABD46_RS02830 (AABD46_02830)	ispD	584481..585185 (+)	705	WP_140103986.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABD46_RS02835 (AABD46_02835)	ispF	585203..585679 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABD46_RS02840 (AABD46_02840)	truD	585726..586769 (+)	1044	WP_140103985.1	tRNA pseudouridine(13) synthase TruD	-
AABD46_RS02845 (AABD46_02845)	surE	586769..587545 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
AABD46_RS02850 (AABD46_02850)	-	587545..588171 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AABD46_RS02855 (AABD46_02855)	-	588186..589109 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
AABD46_RS02860 (AABD46_02860)	rpoS	589190..590179 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AABD46_RS02865 (AABD46_02865)	mutS	590259..592820 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
AABD46_RS02870 (AABD46_02870)	pncC	592905..593387 (+)	483	WP_140104007.1	nicotinamide-nucleotide amidase	-
AABD46_RS02875 (AABD46_02875)	recA	593587..594630 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=974175 AABD46_RS02860 WP_005478537.1 589190..590179(+) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202212]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=974175 AABD46_RS02860 WP_005478537.1 589190..590179(+) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCTTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851