Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD55_RS00295 Genome accession   NZ_CP150940
Coordinates   57616..59136 (-) Length   506 a.a.
NCBI ID   WP_012846967.1    Uniprot ID   A0AAQ3C0J8
Organism   Edwardsiella piscicida strain S11-233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 52616..64136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD55_RS00270 (AABD55_00270) - 53370..54299 (+) 930 Protein_53 glycine C-acetyltransferase -
  AABD55_RS00275 (AABD55_00275) istA 54386..55408 (+) 1023 WP_012846921.1 IS21 family transposase -
  AABD55_RS00280 (AABD55_00280) istB 55405..56187 (+) 783 WP_012846920.1 IS21-like element ISSen3 family helper ATPase IstB -
  AABD55_RS00285 (AABD55_00285) - 56256..56525 (+) 270 Protein_56 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  AABD55_RS00290 (AABD55_00290) tdh 56535..57560 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  AABD55_RS00295 (AABD55_00295) comM 57616..59136 (-) 1521 WP_012846967.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD55_RS00300 (AABD55_00300) - 59424..60659 (+) 1236 WP_012846968.1 MFS transporter -
  AABD55_RS00305 (AABD55_00305) ilvL 60787..60885 (+) 99 WP_071818493.1 ilv operon leader peptide -
  AABD55_RS00310 (AABD55_00310) ilvG 61023..62672 (+) 1650 WP_012846969.1 acetolactate synthase 2 catalytic subunit -
  AABD55_RS00315 (AABD55_00315) ilvM 62669..62959 (+) 291 WP_012846970.1 acetolactate synthase 2 small subunit -
  AABD55_RS00320 (AABD55_00320) - 63012..63941 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53829.20 Da        Isoelectric Point: 9.3863

>NTDB_id=974085 AABD55_RS00295 WP_012846967.1 57616..59136(-) (comM) [Edwardsiella piscicida strain S11-233]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRVSVGDYEFIGELALSGDLRSVQGTLPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGKMTSDCAGAGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGAMPPRYGMRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=974085 AABD55_RS00295 WP_012846967.1 57616..59136(-) (comM) [Edwardsiella piscicida strain S11-233]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCGTATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGACGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAACTCGGGCTGCTGGCAGCCCCTCGTCCCCCCGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCAAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCGGGCGCAATGCCGCCGCGCTATGGCATGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAAATCTCGC
TGGCCCATCACGGCGTCCTGTTTCTTGACGAGCTGGCCGAATTCGATCGGCGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCTATGGATCGGCTACTGCTCTCCCTGCAGCGGGGATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

57.199

100

0.573
  comM Glaesserella parasuis strain SC1401

55.294

100

0.557
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.717

100

0.429

Multiple sequence alignment