Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD65_RS00340 Genome accession   NZ_CP150937
Coordinates   67681..69201 (-) Length   506 a.a.
NCBI ID   WP_392405030.1    Uniprot ID   -
Organism   Edwardsiella piscicida strain 35-70     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 62681..74201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD65_RS00320 (AABD65_00320) rfaF 63089..64150 (-) 1062 WP_392405029.1 ADP-heptose--LPS heptosyltransferase RfaF -
  AABD65_RS00325 (AABD65_00325) rfaD 64174..65103 (-) 930 WP_012846964.1 ADP-glyceromanno-heptose 6-epimerase -
  AABD65_RS00330 (AABD65_00330) - 65394..66590 (+) 1197 WP_015460667.1 glycine C-acetyltransferase -
  AABD65_RS00335 (AABD65_00335) tdh 66600..67625 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  AABD65_RS00340 (AABD65_00340) comM 67681..69201 (-) 1521 WP_392405030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD65_RS00345 (AABD65_00345) - 69489..70724 (+) 1236 WP_392405031.1 MFS transporter -
  AABD65_RS00350 (AABD65_00350) ilvL 70852..70950 (+) 99 WP_071818493.1 ilv operon leader peptide -
  AABD65_RS00355 (AABD65_00355) ilvG 71088..72737 (+) 1650 WP_136499465.1 acetolactate synthase 2 catalytic subunit -
  AABD65_RS00360 (AABD65_00360) ilvM 72734..73024 (+) 291 WP_012846970.1 acetolactate synthase 2 small subunit -
  AABD65_RS00365 (AABD65_00365) - 73077..74006 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53763.10 Da        Isoelectric Point: 9.3863

>NTDB_id=974024 AABD65_RS00340 WP_392405030.1 67681..69201(-) (comM) [Edwardsiella piscicida strain 35-70]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRISVGDYEFIGELALSGDLRSVQGALPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGKMTSDCAGAGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGAMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAIDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=974024 AABD65_RS00340 WP_392405030.1 67681..69201(-) (comM) [Edwardsiella piscicida strain 35-70]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCATATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGGCGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAACTCGGGCTGCTGGCAGCCCCTCGTCCCCCCGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCAAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCAGGCGCAATGCCGCCGCGCTATGGCGTGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAGATCTCGC
TGGCCCATCACGGCGTCCTGTTTCTTGACGAACTGGCCGAATTCGATCGGCGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCCCTGAGCTACCGCGCTATAGATCGGCTACTGCTCTCCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.25

99.407

0.579
  comM Haemophilus influenzae Rd KW20

57.002

100

0.571
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Glaesserella parasuis strain SC1401

55.294

100

0.557
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.431

Multiple sequence alignment