Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACMFHA_RS16415 | Genome accession | NZ_CP179705 |
| Coordinates | 3429334..3429849 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain PR3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3424334..3434849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMFHA_RS16395 (ACMFHA_16395) | - | 3424653..3426113 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| ACMFHA_RS16400 (ACMFHA_16400) | - | 3426390..3427595 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACMFHA_RS16405 (ACMFHA_16405) | - | 3427614..3427757 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACMFHA_RS16410 (ACMFHA_16410) | omp38 | 3427882..3428952 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACMFHA_RS16415 (ACMFHA_16415) | fimT | 3429334..3429849 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACMFHA_RS16420 (ACMFHA_16420) | - | 3429958..3431133 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACMFHA_RS16425 (ACMFHA_16425) | - | 3431260..3431703 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| ACMFHA_RS16430 (ACMFHA_16430) | - | 3431746..3432099 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACMFHA_RS16435 (ACMFHA_16435) | - | 3432182..3432667 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACMFHA_RS16440 (ACMFHA_16440) | - | 3432660..3434303 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=973918 ACMFHA_RS16415 WP_000477147.1 3429334..3429849(+) (fimT) [Acinetobacter baumannii strain PR3]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=973918 ACMFHA_RS16415 WP_000477147.1 3429334..3429849(+) (fimT) [Acinetobacter baumannii strain PR3]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |