Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MY015_RS14540 Genome accession   NZ_AP026907
Coordinates   2981159..2981788 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MY732     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976159..2986788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY015_RS14525 (MY016_28120) helD 2976401..2978455 (-) 2055 WP_000420533.1 DNA helicase IV -
  MY015_RS14530 (MY016_28130) yccF 2978578..2979024 (+) 447 WP_001261231.1 YccF domain-containing protein -
  MY015_RS14535 (MY016_28140) yccS 2979034..2981196 (+) 2163 WP_000875023.1 YccS family putative transporter -
  MY015_RS14540 (MY016_28150) sxy/tfoX 2981159..2981788 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MY015_RS14545 (MY016_28160) sulA 2982007..2982516 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MY015_RS14550 (MY016_28180) ompA 2982873..2983925 (+) 1053 WP_000750419.1 porin OmpA -
  MY015_RS14555 (MY016_28190) matP 2984001..2984453 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  MY015_RS14560 (MY016_28200) ycbZ 2984639..2986399 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=97389 MY015_RS14540 WP_000839153.1 2981159..2981788(-) (sxy/tfoX) [Escherichia coli strain MY732]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=97389 MY015_RS14540 WP_000839153.1 2981159..2981788(-) (sxy/tfoX) [Escherichia coli strain MY732]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment