Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABM56_RS21415 Genome accession   NZ_CP150916
Coordinates   4616802..4618292 (+) Length   496 a.a.
NCBI ID   WP_347883684.1    Uniprot ID   -
Organism   Pseudomonas aestiva strain DGS32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4602940..4619919 4616802..4618292 within 0


Gene organization within MGE regions


Location: 4602940..4619919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS21345 - 4602949..4604670 (+) 1722 WP_347883678.1 site-specific integrase -
  AABM56_RS21350 - 4604918..4605433 (-) 516 WP_347883679.1 Rha family transcriptional regulator -
  AABM56_RS21355 - 4605862..4606491 (-) 630 WP_347883680.1 hypothetical protein -
  AABM56_RS21360 - 4606730..4607347 (-) 618 WP_347883681.1 recombinase family protein -
  AABM56_RS21365 - 4607808..4609844 (+) 2037 WP_347883682.1 AIPR family protein -
  AABM56_RS21370 - 4609822..4611249 (-) 1428 WP_347883683.1 hypothetical protein -
  AABM56_RS21375 - 4611639..4611977 (-) 339 WP_133861994.1 cupin domain-containing protein -
  AABM56_RS21380 - 4612285..4612497 (+) 213 WP_133861995.1 hypothetical protein -
  AABM56_RS21385 - 4612722..4613057 (+) 336 WP_133861996.1 hypothetical protein -
  AABM56_RS21390 sutA 4613321..4613653 (-) 333 WP_133861997.1 transcriptional regulator SutA -
  AABM56_RS21395 - 4613725..4614144 (-) 420 WP_007159806.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AABM56_RS21400 - 4614317..4615657 (-) 1341 WP_133861998.1 ammonium transporter -
  AABM56_RS21405 glnK 4615706..4616044 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  AABM56_RS21410 - 4616439..4616738 (+) 300 WP_263259346.1 accessory factor UbiK family protein -
  AABM56_RS21415 comM 4616802..4618292 (+) 1491 WP_347883684.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABM56_RS21420 - 4618289..4618480 (-) 192 WP_027597468.1 hypothetical protein -
  AABM56_RS21425 - 4618579..4619919 (-) 1341 WP_263259874.1 IS4 family transposase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52622.62 Da        Isoelectric Point: 7.7675

>NTDB_id=973738 AABM56_RS21415 WP_347883684.1 4616802..4618292(+) (comM) [Pseudomonas aestiva strain DGS32]
MSLALVHTRAQVGVEAPPVLVEAHLANGLPALALVGLPETAVREAKDRVRSAILNAGFEFPSRRITLNLAPADLPKDGDR
FDLALAIGILAASGQLPTPGLDGYECLGELALSGAVRAVRGVLPAALAARAAGRILVVPRANAEEACLASGLRVLAVDHL
LEFAGHLSGQAVLAPYQPSGLLRTPLPYPDLAEVQGQQAAKRALVVAAAGAHSLLLAGPPGTGKTLLASRLPGLLPPLDE
EEALQVAAIHSVAGPEPLEHWPQRPFRQPHHSASGPALVGGGSRPGPGEITLAHRGVLFLDELPEFDRKVLEVLREPLES
GEIVIARARERVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRGKLSGPLLDRIDLHLTVAREHLRLGASAAS
ELTTAEAARQVADARTIQLARQGRPNALLGLDQLHQVCALSEADQRWLEGAGERLNLSLRALHRVVKVARTLADLAGQAE
IQRPQLAEALQYRASH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=973738 AABM56_RS21415 WP_347883684.1 4616802..4618292(+) (comM) [Pseudomonas aestiva strain DGS32]
ATGTCGCTTGCCCTCGTTCATACCCGCGCCCAGGTGGGCGTGGAAGCGCCGCCGGTATTGGTCGAGGCGCACCTGGCCAA
TGGCCTGCCCGCCCTCGCCCTGGTCGGCCTGCCGGAAACCGCCGTCCGCGAAGCCAAGGATCGGGTGCGCAGCGCCATCC
TCAATGCCGGCTTCGAATTCCCCAGTCGCCGCATCACCCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGCGACCGC
TTCGACCTCGCCCTGGCCATCGGCATCCTCGCCGCCAGCGGACAGCTACCGACGCCGGGCCTCGACGGCTATGAATGCCT
GGGTGAGCTGGCCCTGTCGGGCGCGGTGCGGGCGGTGCGCGGCGTGCTGCCTGCAGCGCTGGCGGCCCGAGCCGCCGGCC
GCATCCTGGTGGTGCCCCGCGCCAACGCCGAGGAAGCCTGCCTGGCCAGTGGCCTCAGGGTGCTGGCGGTCGATCACCTG
CTGGAGTTCGCCGGTCACCTGAGTGGCCAGGCCGTGCTGGCCCCCTATCAGCCCAGCGGCCTGCTGCGCACCCCATTGCC
CTATCCCGATCTCGCCGAGGTGCAGGGCCAGCAGGCGGCCAAGCGCGCCCTGGTGGTGGCCGCGGCGGGTGCCCACAGTC
TCCTGCTGGCCGGTCCACCGGGAACCGGCAAGACCCTGCTCGCCAGTCGCCTGCCAGGGCTGCTGCCGCCCCTGGATGAA
GAAGAGGCGCTGCAGGTGGCCGCCATCCATTCGGTGGCCGGCCCCGAGCCGCTGGAACACTGGCCGCAGCGACCCTTTCG
CCAGCCGCATCATTCGGCGTCCGGTCCAGCGCTGGTGGGCGGCGGCAGCCGACCCGGTCCCGGCGAGATCACCCTGGCCC
ATCGCGGGGTACTGTTTCTCGACGAGTTGCCCGAATTCGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCCCTGGAGAGT
GGCGAAATCGTCATCGCCCGGGCGCGGGAACGGGTGCGCTTTCCGGCCCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGCGGCTACCTGGGTGATCCCAGCGGCCGCTGCCGCTGCAGCCCGGAGCAGATCCAGCGCTATCGCGGCAAGCTGT
CCGGTCCGCTGCTGGACCGTATCGACCTGCACCTGACGGTAGCCCGCGAGCACCTGCGGCTGGGCGCCTCAGCGGCCAGT
GAGCTCACCACGGCGGAAGCCGCACGCCAGGTGGCCGACGCCCGGACCATTCAGCTGGCGCGCCAGGGGCGACCCAACGC
CCTGCTCGGCCTCGATCAACTGCACCAGGTCTGCGCCCTGAGCGAGGCCGATCAGCGTTGGCTGGAGGGCGCGGGCGAAC
GCCTGAATCTGTCCCTGCGCGCCCTGCACCGGGTGGTCAAGGTGGCCCGCACCCTGGCCGATCTCGCCGGCCAGGCCGAA
ATCCAGCGGCCACAGCTGGCGGAAGCGCTGCAGTATCGGGCGAGTCACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.444

100

0.554
  comM Vibrio campbellii strain DS40M4

55.444

100

0.554
  comM Glaesserella parasuis strain SC1401

52.894

100

0.534
  comM Haemophilus influenzae Rd KW20

52.59

100

0.532
  comM Legionella pneumophila str. Paris

49.203

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.203

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.149

100

0.46

Multiple sequence alignment