Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AABM56_RS17170 Genome accession   NZ_CP150916
Coordinates   3692647..3693282 (-) Length   211 a.a.
NCBI ID   WP_059315847.1    Uniprot ID   A0AAX3L304
Organism   Pseudomonas aestiva strain DGS32     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687647..3698282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS17135 petA 3688184..3688762 (-) 579 WP_347883544.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  AABM56_RS17140 murB 3688759..3689781 (-) 1023 WP_133862780.1 UDP-N-acetylmuramate dehydrogenase -
  AABM56_RS17145 - 3689771..3690238 (-) 468 WP_263259569.1 low molecular weight protein-tyrosine-phosphatase -
  AABM56_RS17150 kdsB 3690245..3691009 (-) 765 WP_133862782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM56_RS17155 - 3691006..3691191 (-) 186 WP_007162406.1 Trm112 family protein -
  AABM56_RS17160 lpxK 3691206..3692213 (-) 1008 WP_133862783.1 tetraacyldisaccharide 4'-kinase -
  AABM56_RS17165 - 3692210..3692650 (-) 441 WP_133862784.1 biopolymer transporter ExbD -
  AABM56_RS17170 exbB 3692647..3693282 (-) 636 WP_059315847.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM56_RS17175 - 3693331..3695571 (-) 2241 Protein_3373 DNA internalization-related competence protein ComEC/Rec2 -
  AABM56_RS17180 - 3695676..3696917 (-) 1242 WP_133862786.1 lipoprotein-releasing ABC transporter permease subunit -
  AABM56_RS17185 lolD 3696925..3697626 (-) 702 WP_026083696.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23065.12 Da        Isoelectric Point: 6.8860

>NTDB_id=973725 AABM56_RS17170 WP_059315847.1 3692647..3693282(-) (exbB) [Pseudomonas aestiva strain DGS32]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRSRVAPPTLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAT
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGAPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=973725 AABM56_RS17170 WP_059315847.1 3692647..3693282(-) (exbB) [Pseudomonas aestiva strain DGS32]
GTGTTCGAAATGGTCAAAGCTGGCGGCTGGATGATGCTGCCAATCATCCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTGAGACGCAGCCGGGTCGCACCGCCGACGCTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AGCAGCTCAATGCCGAGCGGCTGCGCGAATTGCGCGCCGGATCGCCCCTGGGCGACATCCTCGCCGCGGGCCTGACCAAC
TCCCGTCACGGCCGCGACATCATGAAGGAAGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCACGACCTCGAGCGCTATCT
CAACACCCTCGGCAGCATCGCCGCCCTGGCACCCCTGATGGGCCTGCTGGGCACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTCATGAACGACGGCATGGCCAATGCGCCCATCCTCGCCGGCGGCATCTCCAAGGCCCTGGTCACCACCGCCACC
GGCCTGCTGGTGGCGATTCCCGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGATGAGCTGGTGGTCGGAATGGA
GCAGGAAGCGGTCAAGCTGGTGGACATCCTCCACGGCGATCGCGAGGTGGACGTCCGCGAAGGGGCTCCGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75

98.578

0.739

Multiple sequence alignment