Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AABD49_RS22575 Genome accession   NZ_CP150910
Coordinates   1279956..1281137 (+) Length   393 a.a.
NCBI ID   WP_025623178.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-202008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274956..1286137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD49_RS22560 (AABD49_22560) - 1275216..1277450 (+) 2235 WP_341276341.1 collagenase -
  AABD49_RS22565 (AABD49_22565) - 1277630..1278367 (+) 738 WP_025623181.1 EAL domain-containing protein -
  AABD49_RS22570 (AABD49_22570) ylqF 1278657..1279601 (+) 945 WP_025623179.1 ribosome biogenesis GTPase YlqF -
  AABD49_RS22575 (AABD49_22575) cqsA 1279956..1281137 (+) 1182 WP_025623178.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AABD49_RS22580 (AABD49_22580) cqsS 1281215..1283263 (-) 2049 WP_267390866.1 hybrid sensor histidine kinase/response regulator Regulator
  AABD49_RS22585 (AABD49_22585) - 1283583..1284200 (+) 618 WP_005481262.1 HAD family phosphatase -
  AABD49_RS22590 (AABD49_22590) - 1284287..1284835 (-) 549 WP_031827588.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43871.24 Da        Isoelectric Point: 6.5592

>NTDB_id=973711 AABD49_RS22575 WP_025623178.1 1279956..1281137(+) (cqsA) [Vibrio parahaemolyticus strain vp-HL-202008]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFIGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDRVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=973711 AABD49_RS22575 WP_025623178.1 1279956..1281137(+) (cqsA) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGATAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTATCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCGCGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment