Detailed information NTG0973702

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABD49_RS15250
• Genome accession: NZ_CP150909
• Coordinates: 3209614..3210621 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain vp-HL-202008
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3204614..3215621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD49_RS15230 (AABD49_15230)	rplC	3205148..3205777 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
AABD49_RS15235 (AABD49_15235)	rpsJ	3205792..3206103 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
AABD49_RS15240 (AABD49_15240)	rpmE	3206561..3206782 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
AABD49_RS15245 (AABD49_15245)	priA	3207077..3209281 (+)	2205	WP_029824531.1	primosomal protein N'	-
AABD49_RS15250 (AABD49_15250)	cytR	3209614..3210621 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
AABD49_RS15255 (AABD49_15255)	ftsN	3210798..3211343 (+)	546	WP_005481405.1	cell division protein FtsN	-
AABD49_RS15260 (AABD49_15260)	hslV	3211508..3212059 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
AABD49_RS15265 (AABD49_15265)	hslU	3212083..3213414 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
AABD49_RS15270 (AABD49_15270)	-	3213838..3214062 (-)	225	WP_005489715.1	hypothetical protein	-
AABD49_RS15275 (AABD49_15275)	-	3214222..3214371 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
AABD49_RS15280 (AABD49_15280)	radC	3214542..3215015 (+)	474	WP_025792561.1	DNA repair protein RadC	-
AABD49_RS15285 (AABD49_15285)	-	3215012..3215443 (+)	432	WP_017633432.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=973702 AABD49_RS15250 WP_005481416.1 3209614..3210621(+) (cytR) [Vibrio parahaemolyticus strain vp-HL-202008]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=973702 AABD49_RS15250 WP_005481416.1 3209614..3210621(+) (cytR) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904