Detailed information NTG0973635

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABD47_RS02720
• Genome accession: NZ_CP150902
• Coordinates: 560307..561296 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-HL-202006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 555307..566296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD47_RS02685 (AABD47_02685)	ftsB	555315..555596 (+)	282	WP_005455577.1	cell division protein FtsB	-
AABD47_RS02690 (AABD47_02690)	ispD	555598..556302 (+)	705	WP_069536395.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABD47_RS02695 (AABD47_02695)	ispF	556320..556796 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABD47_RS02700 (AABD47_02700)	truD	556843..557886 (+)	1044	WP_069536394.1	tRNA pseudouridine(13) synthase TruD	-
AABD47_RS02705 (AABD47_02705)	surE	557886..558662 (+)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
AABD47_RS02710 (AABD47_02710)	-	558662..559288 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AABD47_RS02715 (AABD47_02715)	-	559303..560226 (+)	924	WP_069536393.1	peptidoglycan DD-metalloendopeptidase family protein	-
AABD47_RS02720 (AABD47_02720)	rpoS	560307..561296 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AABD47_RS02725 (AABD47_02725)	mutS	561375..563936 (-)	2562	WP_069536392.1	DNA mismatch repair protein MutS	-
AABD47_RS02730 (AABD47_02730)	pncC	564021..564503 (+)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
AABD47_RS02735 (AABD47_02735)	recA	564704..565747 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=973635 AABD47_RS02720 WP_005478537.1 560307..561296(+) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202006]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=973635 AABD47_RS02720 WP_005478537.1 560307..561296(+) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202006]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851