Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WOB24_RS14995 Genome accession   NZ_CP150891
Coordinates   3188691..3189911 (+) Length   406 a.a.
NCBI ID   WP_341303786.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3183691..3194911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOB24_RS14965 (WOB24_14965) - 3184048..3184761 (-) 714 WP_341303780.1 hypothetical protein -
  WOB24_RS14970 (WOB24_14970) - 3184886..3185695 (-) 810 WP_341303781.1 ABC transporter permease -
  WOB24_RS14975 (WOB24_14975) - 3185800..3186003 (-) 204 WP_341303782.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WOB24_RS14980 (WOB24_14980) - 3186098..3186541 (-) 444 WP_341303783.1 hypothetical protein -
  WOB24_RS14985 (WOB24_14985) - 3186561..3186746 (-) 186 WP_341303784.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WOB24_RS14990 (WOB24_14990) pilB 3186984..3188687 (+) 1704 WP_341303785.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WOB24_RS14995 (WOB24_14995) pilC 3188691..3189911 (+) 1221 WP_341303786.1 type II secretion system F family protein Machinery gene
  WOB24_RS15000 (WOB24_15000) pilD 3189915..3190781 (+) 867 WP_341303787.1 A24 family peptidase Machinery gene
  WOB24_RS15005 (WOB24_15005) coaE 3191034..3191648 (+) 615 WP_341303788.1 dephospho-CoA kinase -
  WOB24_RS15010 (WOB24_15010) yacG 3191645..3191845 (+) 201 WP_341303789.1 DNA gyrase inhibitor YacG -
  WOB24_RS15015 (WOB24_15015) - 3191907..3192122 (-) 216 WP_341303790.1 hypothetical protein -
  WOB24_RS15020 (WOB24_15020) - 3192227..3192916 (-) 690 WP_339080105.1 energy-coupling factor ABC transporter permease -
  WOB24_RS15025 (WOB24_15025) - 3193061..3193690 (+) 630 WP_341303791.1 DUF1780 domain-containing protein -
  WOB24_RS15030 (WOB24_15030) - 3193687..3194181 (+) 495 WP_341303792.1 MOSC domain-containing protein -
  WOB24_RS15035 (WOB24_15035) - 3194243..3194416 (+) 174 WP_339080108.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44488.02 Da        Isoelectric Point: 9.8355

>NTDB_id=973531 WOB24_RS14995 WP_341303786.1 3188691..3189911(+) (pilC) [Pseudomonas sp. TMP25]
MAAKAPTISTFSWEGTNKQGAKIKGEINGQNPALVKAQLRKQGINPLKVKKKPKSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPRMRTLIDNVKQEVAAGNSFAASLRTRPEYFDDLYCNLVDSGEQSGALETLLDRIATYKEKT
EALKAKIRKAMTYPISVVVVAIIVTAILLIKVVPQFESVFAGFGAELPAFTQVVVNMSRGLQEWWYLFILAFFAIGFTFK
EAHKRSEKFRDFLDRTLLKAPIVGDILYKSVVARFARTLSTTFSAGVPLVEGLHSVEGAAGNVVFRRAIAKIRNDVSSGT
QLNFSMRTTGVFPSMAIQMTAIGEESGSLDEMLDKTAEYYEAEVDNAVDNLTTLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGAVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=973531 WOB24_RS14995 WP_341303786.1 3188691..3189911(+) (pilC) [Pseudomonas sp. TMP25]
ATGGCGGCCAAAGCTCCAACAATAAGCACCTTTTCATGGGAAGGCACCAATAAACAGGGTGCCAAGATCAAGGGTGAAAT
CAATGGCCAGAACCCGGCCTTGGTCAAGGCGCAGCTGCGCAAGCAAGGCATTAACCCGCTCAAGGTAAAGAAAAAGCCCA
AGTCGCTCTTCAGCGCCGGGAAAAAAATCAAACCCATGGACATTGCTTTGTTTACACGGCAAATGGCGACCATGATGAAA
GCCGGCGTTCCCCTTCTGCAGTCCTTCGACATTATTGGTGAGGGTTTCGAAAACCCGAGGATGCGTACGCTGATTGATAA
TGTTAAGCAAGAAGTTGCGGCTGGTAACAGTTTTGCAGCATCCCTGCGTACTCGGCCTGAATACTTCGATGACCTGTACT
GCAACCTGGTCGACTCCGGCGAACAGTCCGGCGCCCTAGAAACCTTGCTGGATCGGATTGCGACTTACAAGGAAAAGACT
GAAGCACTTAAAGCAAAAATTAGAAAAGCTATGACCTACCCAATTTCGGTAGTTGTTGTTGCGATTATCGTGACGGCCAT
TTTGCTGATTAAGGTCGTGCCGCAGTTTGAGAGTGTGTTCGCTGGCTTTGGCGCTGAGCTACCTGCCTTCACCCAAGTGG
TGGTGAATATGTCGCGAGGATTACAGGAATGGTGGTACCTCTTTATATTGGCTTTCTTTGCAATTGGCTTCACCTTCAAG
GAAGCACACAAACGCTCTGAGAAGTTCCGTGATTTTTTAGATCGAACACTGCTGAAAGCACCTATTGTGGGTGACATTCT
TTACAAATCTGTGGTGGCACGCTTTGCCCGTACTCTGTCCACTACATTTTCCGCCGGCGTACCGCTCGTAGAAGGCCTGC
ATTCAGTTGAGGGCGCAGCCGGTAACGTGGTGTTCCGCCGAGCGATTGCCAAGATTCGTAATGACGTTTCCTCCGGCACG
CAACTCAACTTTTCCATGCGCACCACAGGGGTATTCCCCAGCATGGCTATACAAATGACCGCTATCGGTGAGGAGTCCGG
CTCGCTCGATGAAATGCTCGATAAAACAGCTGAGTATTATGAAGCCGAAGTGGATAACGCCGTGGATAACTTAACAACCT
TGATGGAGCCGCTGATCATGTCAGTACTCGGCGTGTTGGTTGGCGGTTTGATCATTGCAATGTACTTGCCGATATTCCAA
CTCGGCGCGGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.037

99.754

0.768
  pilC Acinetobacter baylyi ADP1

59.36

100

0.594
  pilC Acinetobacter baumannii D1279779

59.653

99.507

0.594
  pilC Legionella pneumophila strain ERS1305867

52.956

100

0.53
  pilG Neisseria meningitidis 44/76-A

45.088

97.783

0.441
  pilG Neisseria gonorrhoeae MS11

45.088

97.783

0.441
  pilC Vibrio campbellii strain DS40M4

42.26

100

0.424
  pilC Vibrio cholerae strain A1552

41.667

100

0.419

Multiple sequence alignment