Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABWW34_RS00455 Genome accession   NZ_AP031323
Coordinates   78122..78697 (-) Length   191 a.a.
NCBI ID   WP_143584205.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73122..83697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW34_RS00420 (TthTF19_00800) - 74013..74249 (-) 237 WP_008632575.1 hypothetical protein -
  ABWW34_RS00425 (TthTF19_00810) - 74234..75304 (-) 1071 WP_244346822.1 M20/M25/M40 family metallo-hydrolase -
  ABWW34_RS00430 (TthTF19_00820) rlmB 75309..76025 (-) 717 WP_011174056.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABWW34_RS00435 (TthTF19_00830) - 76078..76512 (+) 435 WP_008632570.1 universal stress protein -
  ABWW34_RS00440 (TthTF19_00840) - 76513..77028 (+) 516 WP_008632567.1 LOG family protein -
  ABWW34_RS00445 (TthTF19_00850) - 77025..77393 (+) 369 WP_008632565.1 hypothetical protein -
  ABWW34_RS00450 (TthTF19_00860) - 77390..78139 (+) 750 WP_011174058.1 HAD family hydrolase -
  ABWW34_RS00455 (TthTF19_00870) ruvA 78122..78697 (-) 576 WP_143584205.1 Holliday junction branch migration protein RuvA Machinery gene
  ABWW34_RS00460 (TthTF19_00880) - 78694..79458 (-) 765 WP_011174060.1 enoyl-CoA hydratase-related protein -
  ABWW34_RS00465 (TthTF19_00890) - 79536..82226 (+) 2691 WP_353300407.1 2-oxoglutarate dehydrogenase E1 component -
  ABWW34_RS00470 odhB 82237..83456 (+) 1220 Protein_86 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20372.04 Da        Isoelectric Point: 8.5125

>NTDB_id=97352 ABWW34_RS00455 WP_143584205.1 78122..78697(-) (ruvA) [Thermus thermophilus strain TF19]
MIRYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQALEEGKEVGVHTHLLLKEEGLSLYGFPDEENLALFELLLSVSGV
GPKVALALLSALPPRLLARALLEGDARLLTSASGVGKRLAERIALELKGKVPPHLLAGEKVDSEAAEEAVMALAALGFKE
AQARAVVLDLLAQNPKARAQDLIKEALKRLR

Nucleotide


Download         Length: 576 bp        

>NTDB_id=97352 ABWW34_RS00455 WP_143584205.1 78122..78697(-) (ruvA) [Thermus thermophilus strain TF19]
ATGATCCGCTACCTCCGGGGCCTGGTCCTCAAGAAGGAGGCGGGCGGCTTCGTCCTTCTCGCCGGGGGGGTGGGGTTCTT
CCTCCAGGCCCCCACGCCCTTCCTCCAGGCCCTGGAAGAGGGGAAGGAGGTGGGGGTCCACACCCACCTCCTCCTCAAGG
AGGAGGGGCTGTCCCTCTACGGCTTCCCCGACGAGGAAAACCTCGCCCTCTTTGAACTCCTCCTCTCGGTGAGCGGCGTG
GGGCCCAAGGTGGCCCTCGCCCTCCTCTCGGCCCTGCCCCCTAGGCTCCTCGCCCGGGCCCTCCTGGAGGGGGACGCGAG
GCTCCTCACCTCGGCGAGCGGGGTGGGGAAAAGGCTCGCCGAAAGGATCGCCCTGGAGCTCAAGGGGAAGGTGCCCCCCC
ACCTCCTCGCCGGGGAGAAGGTGGATAGCGAGGCCGCGGAGGAGGCGGTGATGGCCCTCGCCGCCTTGGGGTTCAAGGAG
GCCCAGGCGCGGGCGGTGGTCCTGGACCTCCTGGCCCAAAACCCCAAGGCCCGGGCCCAGGACCTCATCAAGGAGGCCCT
AAAGCGCCTCCGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(145-190)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.158

100

0.361

Multiple sequence alignment