Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACK07_RS15830 Genome accession   NZ_AP029012
Coordinates   3386181..3387713 (+) Length   510 a.a.
NCBI ID   WP_043897641.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain MAFF 301069     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381181..3392713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK07_RS15805 (MAFF301069_30920) amt 3381587..3383137 (-) 1551 WP_020831101.1 ammonium transporter -
  AACK07_RS15810 (MAFF301069_30930) - 3383170..3383508 (-) 339 WP_028852549.1 P-II family nitrogen regulator -
  AACK07_RS15815 (MAFF301069_30940) - 3383556..3384362 (-) 807 WP_118872411.1 TorF family putative porin -
  AACK07_RS15820 (MAFF301069_30950) - 3384913..3385176 (+) 264 WP_011000304.1 accessory factor UbiK family protein -
  AACK07_RS15825 (MAFF301069_30960) - 3385456..3385971 (+) 516 WP_011000303.1 hypothetical protein -
  AACK07_RS15830 (MAFF301069_30970) comM 3386181..3387713 (+) 1533 WP_043897641.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACK07_RS15835 (MAFF301069_30980) - 3387857..3389347 (+) 1491 WP_011000301.1 tyrosinase family protein -
  AACK07_RS15840 (MAFF301069_30990) - 3389394..3389870 (+) 477 WP_118872412.1 signal peptidase -
  AACK07_RS15845 (MAFF301069_31000) - 3390003..3390566 (-) 564 WP_118872413.1 hypothetical protein -
  AACK07_RS15850 (MAFF301069_31010) - 3390666..3391181 (+) 516 WP_011000298.1 O-acetyl-ADP-ribose deacetylase -
  AACK07_RS15855 (MAFF301069_31020) - 3391285..3391836 (+) 552 WP_028852544.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54568.25 Da        Isoelectric Point: 7.8372

>NTDB_id=97346 AACK07_RS15830 WP_043897641.1 3386181..3387713(+) (comM) [Ralstonia pseudosolanacearum strain MAFF 301069]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRQPGPPDGDAPRPRAFVLPTENAAEAALVS
GTRVLPAHTLSEVCDHLSTPDRKLAPAVPAPIGASVHYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVDRYQARLSGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQRARQGKRNALLAGHEIDLHCTRTDAADSLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=97346 AACK07_RS15830 WP_043897641.1 3386181..3387713(+) (comM) [Ralstonia pseudosolanacearum strain MAFF 301069]
ATGAGTCTTGCCGTCCTGCGTTCACGGGCGCTGGCCGGCATCGACGCGCCGGCGGTATCGGTGGAGGTGCACCTGGCCAA
CGGACTGCCCTCCTTCACCATCGTCGGTCTGCCGGACACGGAGGTGAAGGAAAGCAAGGACCGCGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCCGCGCGGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCCGAAAGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCCGGCAGATTCCGCACACGCACCTGGACGCGCACGAGTTTGC
GGGAGAGCTGTCGCTGTCGGGCGACCTGCGGCCGATCCGTGGCGCGCTGGCCATGGCATATGCGCTGTCGCGCCAGCCGG
GGCCGCCCGATGGCGATGCGCCGCGCCCTCGCGCCTTTGTCCTGCCCACCGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTGCTGCCGGCGCACACGCTGAGCGAGGTCTGCGACCATCTGTCCACGCCCGACCGCAAGCTGGCGCCCGC
CGTGCCCGCCCCAATCGGCGCCAGCGTCCACTATCCCGACCTGGCCGACGTACGCGGCCAGCCTCAGGCGCGCCGCGCCC
TGGAAGTGGCAGCGGCCGGTGGCCACTCGATGCTGATGATCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCCCAGCGC
TTTCCCGGCTTGCTGCCCGACATGAGCGACGACGAGGCGCTCTCCGCTGCCGCGGTGATGAGCCTGACCACGCGCGGTTT
CGATGCGCAGCGCTGGAAGGTGCGTCCGTTCCGCGCGCCGCACCACACGGCGTCGGCGGTGGCGATGGTGGGAGGCGGCA
ACACGCCGCGGCCGGGCGAGATTTCGCTGGCGCATCAGGGCGTACTGTTCCTCGATGAATTGCCCGAATTCGAGCGCCGC
GTGCTGGAGGTCCTGCGGGAGCCGCTGGAAACCGGCCATATCACCATCTCCCGCGCGGCGCACCAGACGGATTTTCCCGC
CAGTTTCCAACTGATCGCGGCCATGAATCCGTGCCCGTGCGGCTATCGCGGGCATCCATTGCGCGCGTGCCGGTGCACGC
CGGACCAGGTGGATCGCTATCAGGCCCGCCTCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAGGAATTGCTCGATGGCCCGCCCGGCGAGCCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
ACGGCAACGGGCGCGCCAGGGCAAACGCAACGCACTGCTGGCCGGGCACGAGATCGATCTGCATTGCACGCGCACCGACG
CTGCCGACAGCCTGCTGCGCCAGGCGATGACGCGCTTCTCGTGGTCGGCCCGCGCCTATGCGCGCGTGCTCAAGCTCGCC
CGCACCATCGCCGACCTGGCGGGCGACGCGGCTGTCGATACGGCGCACGTTGGCGAAGCCATCCAATACCGGCGCGGCGT
GAAAGCAGACTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

53.755

99.216

0.533
  comM Vibrio cholerae strain A1552

53.755

99.216

0.533
  comM Vibrio campbellii strain DS40M4

52.673

99.02

0.522
  comM Glaesserella parasuis strain SC1401

51.373

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.176

100

0.512
  comM Legionella pneumophila str. Paris

51.176

100

0.512
  comM Haemophilus influenzae Rd KW20

49.903

100

0.504
  comM Acinetobacter baylyi ADP1

49.703

99.02

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.054

100

0.425

Multiple sequence alignment