Detailed information NTG0973410

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: WF295_RS09330
• Genome accession: NZ_CP150885
• Coordinates: 1836113..1836892 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain Baplich1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1831113..1841892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WF295_RS09310 (WF295_09310)	trmFO	1831810..1833114 (+)	1305	WP_020451382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
WF295_RS09315 (WF295_09315)	xerC	1833181..1834095 (+)	915	WP_020451383.1	tyrosine recombinase XerC	-
WF295_RS09320 (WF295_09320)	hslV	1834109..1834654 (+)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
WF295_RS09325 (WF295_09325)	hslU	1834662..1836074 (+)	1413	WP_256163786.1	HslU--HslV peptidase ATPase subunit	-
WF295_RS09330 (WF295_09330)	codY	1836113..1836892 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
WF295_RS09335 (WF295_09335)	flgB	1837244..1837633 (+)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
WF295_RS09340 (WF295_09340)	flgC	1837633..1838085 (+)	453	WP_020451388.1	flagellar basal body rod protein FlgC	-
WF295_RS09345 (WF295_09345)	fliE	1838099..1838416 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
WF295_RS09350 (WF295_09350)	fliF	1838467..1840068 (+)	1602	WP_020451390.1	flagellar basal-body MS-ring/collar protein FliF	-
WF295_RS09355 (WF295_09355)	fliG	1840082..1841098 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
WF295_RS09360 (WF295_09360)	fliH	1841082..1841849 (+)	768	WP_020451392.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=973410 WF295_RS09330 WP_003181756.1 1836113..1836892(+) (codY) [Bacillus paralicheniformis strain Baplich1]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=973410 WF295_RS09330 WP_003181756.1 1836113..1836892(+) (codY) [Bacillus paralicheniformis strain Baplich1]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467