Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AACK07_RS14100 Genome accession   NZ_AP029012
Coordinates   3040990..3041358 (-) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain MAFF 301069     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3035990..3046358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK07_RS14090 (MAFF301069_27540) - 3037909..3040140 (-) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -
  AACK07_RS14095 (MAFF301069_27550) - 3040386..3040931 (-) 546 WP_011000625.1 chemotaxis protein CheW -
  AACK07_RS14100 (MAFF301069_27560) pilH 3040990..3041358 (-) 369 WP_003269243.1 response regulator Machinery gene
  AACK07_RS14105 (MAFF301069_27570) pilG 3041390..3041833 (-) 444 WP_071615340.1 response regulator Regulator
  AACK07_RS14110 (MAFF301069_27580) - 3042148..3042330 (-) 183 WP_003261842.1 rubredoxin -
  AACK07_RS14115 (MAFF301069_27590) hemL 3042542..3043843 (+) 1302 WP_111374466.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AACK07_RS14120 (MAFF301069_27600) dapA 3043946..3044860 (-) 915 WP_020831380.1 4-hydroxy-tetrahydrodipicolinate synthase -
  AACK07_RS14125 (MAFF301069_27610) - 3045241..3045867 (+) 627 WP_016723449.1 LemA family protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=97333 AACK07_RS14100 WP_003269243.1 3040990..3041358(-) (pilH) [Ralstonia pseudosolanacearum strain MAFF 301069]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=97333 AACK07_RS14100 WP_003269243.1 3040990..3041358(-) (pilH) [Ralstonia pseudosolanacearum strain MAFF 301069]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434

Multiple sequence alignment